Hb_000608_130

Information

Type -
Description -
Location Contig608: 56619-58342
Sequence    

Annotation

kegg
ID tcc:TCM_023639
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EWB4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023639 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_130 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_004297_060 0.1697034787 - - Cucumisin protein [Theobroma cacao]
3 Hb_148908_020 0.1775231167 - - -
4 Hb_000080_050 0.236301494 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Vitis vinifera]
5 Hb_007713_020 0.2546803581 - - -
6 Hb_012522_020 0.2734392337 - - -
7 Hb_048125_010 0.274567879 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
8 Hb_019677_010 0.2760012988 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_000058_220 0.2761393423 - - hypothetical protein, partial [Staphylococcus aureus]
10 Hb_001831_020 0.2765513933 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_008031_020 0.276770811 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_049901_010 0.2881877215 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
13 Hb_034454_020 0.2881967052 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_011707_010 0.297056635 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_076693_010 0.2971587845 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
16 Hb_092027_010 0.2974807702 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
17 Hb_000425_050 0.3059747834 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
18 Hb_009563_020 0.3060140045 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_007287_020 0.3060885464 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
20 Hb_001147_100 0.3061888087 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_000608_130 Hb_000608_130 Hb_004297_060 Hb_004297_060 Hb_000608_130--Hb_004297_060 Hb_148908_020 Hb_148908_020 Hb_000608_130--Hb_148908_020 Hb_000080_050 Hb_000080_050 Hb_000608_130--Hb_000080_050 Hb_007713_020 Hb_007713_020 Hb_000608_130--Hb_007713_020 Hb_012522_020 Hb_012522_020 Hb_000608_130--Hb_012522_020 Hb_048125_010 Hb_048125_010 Hb_000608_130--Hb_048125_010 Hb_004297_060--Hb_148908_020 Hb_001437_290 Hb_001437_290 Hb_004297_060--Hb_001437_290 Hb_004297_060--Hb_000080_050 Hb_011707_010 Hb_011707_010 Hb_004297_060--Hb_011707_010 Hb_076693_010 Hb_076693_010 Hb_004297_060--Hb_076693_010 Hb_148908_020--Hb_001437_290 Hb_148908_020--Hb_000080_050 Hb_082730_010 Hb_082730_010 Hb_148908_020--Hb_082730_010 Hb_094245_010 Hb_094245_010 Hb_148908_020--Hb_094245_010 Hb_000080_050--Hb_007713_020 Hb_000345_470 Hb_000345_470 Hb_000080_050--Hb_000345_470 Hb_000080_050--Hb_012522_020 Hb_007713_020--Hb_012522_020 Hb_007713_020--Hb_048125_010 Hb_019677_010 Hb_019677_010 Hb_007713_020--Hb_019677_010 Hb_000058_220 Hb_000058_220 Hb_007713_020--Hb_000058_220 Hb_001831_020 Hb_001831_020 Hb_007713_020--Hb_001831_020 Hb_008031_020 Hb_008031_020 Hb_007713_020--Hb_008031_020 Hb_012522_020--Hb_048125_010 Hb_012522_020--Hb_019677_010 Hb_012522_020--Hb_000058_220 Hb_012522_020--Hb_001831_020 Hb_012522_020--Hb_008031_020 Hb_012522_020--Hb_011707_010 Hb_048125_010--Hb_019677_010 Hb_048125_010--Hb_000058_220 Hb_048125_010--Hb_001831_020 Hb_048125_010--Hb_008031_020 Hb_048125_010--Hb_011707_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0431779 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20046 0 0 0.0322949 0

CAGE analysis