Hb_000608_170

Information

Type -
Description -
Location Contig608: 70540-79238
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02630g
description hypothetical protein
nr
ID AAF19552.1
description F23N19.4 [Arabidopsis thaliana]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID U5FKC7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s02630g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50819: 70001-70128 , PASA_asmbl_50820: 70248-70915 , PASA_asmbl_50821: 71661-72318 , PASA_asmbl_50822: 77146-77550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_170 0.0 - - F23N19.4 [Arabidopsis thaliana]
2 Hb_000928_010 0.0739170315 - - Cell division protein ftsZ, putative [Ricinus communis]
3 Hb_000462_090 0.10499606 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
4 Hb_005282_020 0.1091434998 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
5 Hb_002685_060 0.1124715931 - - 30S ribosomal protein S5, putative [Ricinus communis]
6 Hb_114310_110 0.1223363859 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_000340_150 0.1282076124 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
8 Hb_003976_020 0.1323759107 - - Regulator of ribonuclease activity A, putative [Ricinus communis]
9 Hb_002217_260 0.1325293986 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
10 Hb_000103_530 0.132592986 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
11 Hb_029920_030 0.132823238 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
12 Hb_005672_020 0.1332117096 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
13 Hb_003544_010 0.1334485908 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_000340_100 0.1337357059 - - PREDICTED: protein PALE CRESS, chloroplastic [Jatropha curcas]
15 Hb_002078_340 0.1372641464 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
16 Hb_011386_020 0.137630839 - - unnamed protein product [Vitis vinifera]
17 Hb_009775_010 0.1381279462 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
18 Hb_000318_130 0.1383302052 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_003994_110 0.1394708369 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
20 Hb_001584_200 0.1401313205 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]

Gene co-expression network

sample Hb_000608_170 Hb_000608_170 Hb_000928_010 Hb_000928_010 Hb_000608_170--Hb_000928_010 Hb_000462_090 Hb_000462_090 Hb_000608_170--Hb_000462_090 Hb_005282_020 Hb_005282_020 Hb_000608_170--Hb_005282_020 Hb_002685_060 Hb_002685_060 Hb_000608_170--Hb_002685_060 Hb_114310_110 Hb_114310_110 Hb_000608_170--Hb_114310_110 Hb_000340_150 Hb_000340_150 Hb_000608_170--Hb_000340_150 Hb_000928_010--Hb_000462_090 Hb_000928_010--Hb_000340_150 Hb_000928_010--Hb_005282_020 Hb_000928_010--Hb_002685_060 Hb_001584_200 Hb_001584_200 Hb_000928_010--Hb_001584_200 Hb_000462_090--Hb_001584_200 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000462_090--Hb_000340_150 Hb_000172_580 Hb_000172_580 Hb_000462_090--Hb_000172_580 Hb_009775_010 Hb_009775_010 Hb_000462_090--Hb_009775_010 Hb_003376_230 Hb_003376_230 Hb_000462_090--Hb_003376_230 Hb_003544_010 Hb_003544_010 Hb_005282_020--Hb_003544_010 Hb_000676_200 Hb_000676_200 Hb_005282_020--Hb_000676_200 Hb_000012_160 Hb_000012_160 Hb_005282_020--Hb_000012_160 Hb_005282_020--Hb_002685_060 Hb_000318_130 Hb_000318_130 Hb_005282_020--Hb_000318_130 Hb_003777_020 Hb_003777_020 Hb_002685_060--Hb_003777_020 Hb_002282_070 Hb_002282_070 Hb_002685_060--Hb_002282_070 Hb_016461_030 Hb_016461_030 Hb_002685_060--Hb_016461_030 Hb_007054_070 Hb_007054_070 Hb_002685_060--Hb_007054_070 Hb_000661_090 Hb_000661_090 Hb_002685_060--Hb_000661_090 Hb_005276_010 Hb_005276_010 Hb_002685_060--Hb_005276_010 Hb_000135_030 Hb_000135_030 Hb_114310_110--Hb_000135_030 Hb_004398_030 Hb_004398_030 Hb_114310_110--Hb_004398_030 Hb_114310_110--Hb_000928_010 Hb_000371_100 Hb_000371_100 Hb_114310_110--Hb_000371_100 Hb_185447_010 Hb_185447_010 Hb_114310_110--Hb_185447_010 Hb_004375_050 Hb_004375_050 Hb_000340_150--Hb_004375_050 Hb_000529_180 Hb_000529_180 Hb_000340_150--Hb_000529_180 Hb_001277_100 Hb_001277_100 Hb_000340_150--Hb_001277_100 Hb_000811_070 Hb_000811_070 Hb_000340_150--Hb_000811_070 Hb_002078_340 Hb_002078_340 Hb_000340_150--Hb_002078_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.658668 0.197872 0.954116 0.534142 0.372725 0.602929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.758195 0.613969 1.11256 0.486383 2.39006

CAGE analysis