Hb_000608_180

Information

Type -
Description -
Location Contig608: 81434-81934
Sequence    

Annotation

kegg
ID cic:CICLE_v10012944mg
description hypothetical protein
nr
ID XP_010533431.1
description PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
swissprot
ID Q9FFE0
description Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 OS=Arabidopsis thaliana GN=At5g16450 PE=1 SV=1
trembl
ID A0A068TPU4
description 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Coffea canephora GN=GSCOC_T00022026001 PE=3 SV=1
Gene Ontology
ID GO:0008168
description 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50826: 81272-83159 , PASA_asmbl_50828: 82663-82826
cDNA
(Sanger)
(ID:Location)		 004_J23.ab1: 81294-83120

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_180 0.0 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
2 Hb_006252_010 0.1250085367 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
3 Hb_002197_030 0.1260033422 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
4 Hb_006487_060 0.1379896799 - - Defective in cullin neddylation protein, putative [Ricinus communis]
5 Hb_137403_010 0.1430465273 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
6 Hb_005965_010 0.144537734 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
7 Hb_002023_020 0.1509444688 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
8 Hb_003656_140 0.1545196325 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
9 Hb_000001_040 0.1562725333 - - unnamed protein product [Coffea canephora]
10 Hb_000996_170 0.1571708286 - - unknown [Glycine max]
11 Hb_005085_030 0.157302796 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
12 Hb_006487_050 0.1593264744 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
13 Hb_000176_120 0.1595980017 - - seryl-tRNA synthetase, putative [Ricinus communis]
14 Hb_152554_010 0.1615790337 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
15 Hb_073339_010 0.1621404796 - - hypothetical protein 30 [Hevea brasiliensis]
16 Hb_001976_050 0.1626477879 - - PREDICTED: protein SKIP34 [Jatropha curcas]
17 Hb_001377_180 0.1628293906 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
18 Hb_106005_010 0.1638151969 - - EG5651 [Manihot esculenta]
19 Hb_000265_130 0.1648036903 - - -
20 Hb_000183_040 0.1649074678 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000608_180 Hb_000608_180 Hb_006252_010 Hb_006252_010 Hb_000608_180--Hb_006252_010 Hb_002197_030 Hb_002197_030 Hb_000608_180--Hb_002197_030 Hb_006487_060 Hb_006487_060 Hb_000608_180--Hb_006487_060 Hb_137403_010 Hb_137403_010 Hb_000608_180--Hb_137403_010 Hb_005965_010 Hb_005965_010 Hb_000608_180--Hb_005965_010 Hb_002023_020 Hb_002023_020 Hb_000608_180--Hb_002023_020 Hb_006252_010--Hb_002023_020 Hb_006252_010--Hb_137403_010 Hb_006252_010--Hb_002197_030 Hb_003656_140 Hb_003656_140 Hb_006252_010--Hb_003656_140 Hb_000364_150 Hb_000364_150 Hb_006252_010--Hb_000364_150 Hb_039253_010 Hb_039253_010 Hb_006252_010--Hb_039253_010 Hb_000453_260 Hb_000453_260 Hb_002197_030--Hb_000453_260 Hb_009543_030 Hb_009543_030 Hb_002197_030--Hb_009543_030 Hb_002197_030--Hb_002023_020 Hb_002197_030--Hb_000364_150 Hb_152554_010 Hb_152554_010 Hb_006487_060--Hb_152554_010 Hb_007763_060 Hb_007763_060 Hb_006487_060--Hb_007763_060 Hb_000176_120 Hb_000176_120 Hb_006487_060--Hb_000176_120 Hb_006663_090 Hb_006663_090 Hb_006487_060--Hb_006663_090 Hb_006487_050 Hb_006487_050 Hb_006487_060--Hb_006487_050 Hb_000825_030 Hb_000825_030 Hb_006487_060--Hb_000825_030 Hb_137403_010--Hb_003656_140 Hb_137403_010--Hb_002023_020 Hb_002982_040 Hb_002982_040 Hb_137403_010--Hb_002982_040 Hb_137403_010--Hb_000364_150 Hb_005862_010 Hb_005862_010 Hb_137403_010--Hb_005862_010 Hb_150360_010 Hb_150360_010 Hb_137403_010--Hb_150360_010 Hb_006455_110 Hb_006455_110 Hb_005965_010--Hb_006455_110 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_106005_010 Hb_106005_010 Hb_005965_010--Hb_106005_010 Hb_012807_080 Hb_012807_080 Hb_005965_010--Hb_012807_080 Hb_006455_080 Hb_006455_080 Hb_005965_010--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_005965_010--Hb_006455_090 Hb_002023_020--Hb_039253_010 Hb_002023_020--Hb_003656_140 Hb_002023_020--Hb_000364_150 Hb_000307_200 Hb_000307_200 Hb_002023_020--Hb_000307_200 Hb_071736_010 Hb_071736_010 Hb_002023_020--Hb_071736_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
928.883 430.147 91.1565 914.059 376.172 3364.52
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1577.86 816.48 526.151 596.162 207.566

CAGE analysis