Hb_000608_210

Information

Type -
Description -
Location Contig608: 91637-91915
Sequence    

Annotation

kegg
ID atr:s00008p00241420
description AMTR_s00008p00241420; hypothetical protein
nr
ID XP_012452915.1
description PREDICTED: leucine-rich repeat receptor-like protein FASCIATED EAR2 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID W1NI01
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00008p00241420 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50832: 91474-91776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_210 0.0 - - PREDICTED: leucine-rich repeat receptor-like protein FASCIATED EAR2 [Gossypium raimondii]
2 Hb_002211_040 0.2880091932 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
3 Hb_011689_140 0.2982909433 - - PREDICTED: probable prolyl 4-hydroxylase 4 [Jatropha curcas]
4 Hb_002401_010 0.305124591 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
5 Hb_003100_010 0.3150503919 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
6 Hb_008195_040 0.3194955698 - - hypothetical protein VITISV_033788 [Vitis vinifera]
7 Hb_004041_070 0.3210347087 - - conserved hypothetical protein [Ricinus communis]
8 Hb_102408_010 0.3310903951 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
9 Hb_003793_020 0.334179431 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000625_110 0.3346728126 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
11 Hb_000009_260 0.3353832501 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
12 Hb_002063_030 0.3374145845 - - -
13 Hb_098988_010 0.3409765071 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
14 Hb_004088_060 0.3474325838 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
15 Hb_012278_010 0.3476234367 - - -
16 Hb_017647_020 0.349625154 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
17 Hb_000069_090 0.3505572048 - - neutral/alkaline invertase [Manihot esculenta]
18 Hb_011077_020 0.3558783926 - - kinase, putative [Ricinus communis]
19 Hb_187136_010 0.3579320294 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
20 Hb_000359_110 0.3606287465 transcription factor TF Family: NAC NAC domain-containing protein 42 [Theobroma cacao]

Gene co-expression network

sample Hb_000608_210 Hb_000608_210 Hb_002211_040 Hb_002211_040 Hb_000608_210--Hb_002211_040 Hb_011689_140 Hb_011689_140 Hb_000608_210--Hb_011689_140 Hb_002401_010 Hb_002401_010 Hb_000608_210--Hb_002401_010 Hb_003100_010 Hb_003100_010 Hb_000608_210--Hb_003100_010 Hb_008195_040 Hb_008195_040 Hb_000608_210--Hb_008195_040 Hb_004041_070 Hb_004041_070 Hb_000608_210--Hb_004041_070 Hb_002211_040--Hb_002401_010 Hb_143629_030 Hb_143629_030 Hb_002211_040--Hb_143629_030 Hb_002301_200 Hb_002301_200 Hb_002211_040--Hb_002301_200 Hb_000111_300 Hb_000111_300 Hb_002211_040--Hb_000111_300 Hb_000275_070 Hb_000275_070 Hb_002211_040--Hb_000275_070 Hb_005725_190 Hb_005725_190 Hb_002211_040--Hb_005725_190 Hb_000625_110 Hb_000625_110 Hb_011689_140--Hb_000625_110 Hb_011689_140--Hb_000111_300 Hb_002417_030 Hb_002417_030 Hb_011689_140--Hb_002417_030 Hb_038758_010 Hb_038758_010 Hb_011689_140--Hb_038758_010 Hb_000142_020 Hb_000142_020 Hb_011689_140--Hb_000142_020 Hb_005426_010 Hb_005426_010 Hb_011689_140--Hb_005426_010 Hb_002401_010--Hb_002301_200 Hb_002401_010--Hb_143629_030 Hb_002401_010--Hb_005725_190 Hb_002401_010--Hb_000111_300 Hb_001902_150 Hb_001902_150 Hb_002401_010--Hb_001902_150 Hb_003100_010--Hb_000142_020 Hb_003100_010--Hb_000625_110 Hb_003100_010--Hb_038758_010 Hb_008695_030 Hb_008695_030 Hb_003100_010--Hb_008695_030 Hb_008453_070 Hb_008453_070 Hb_003100_010--Hb_008453_070 Hb_002063_030 Hb_002063_030 Hb_003100_010--Hb_002063_030 Hb_002016_160 Hb_002016_160 Hb_008195_040--Hb_002016_160 Hb_008195_040--Hb_000625_110 Hb_008195_040--Hb_005725_190 Hb_006857_030 Hb_006857_030 Hb_008195_040--Hb_006857_030 Hb_008195_040--Hb_002417_030 Hb_008195_040--Hb_002401_010 Hb_102408_010 Hb_102408_010 Hb_004041_070--Hb_102408_010 Hb_003793_020 Hb_003793_020 Hb_004041_070--Hb_003793_020 Hb_000009_260 Hb_000009_260 Hb_004041_070--Hb_000009_260 Hb_012278_010 Hb_012278_010 Hb_004041_070--Hb_012278_010 Hb_004604_020 Hb_004604_020 Hb_004041_070--Hb_004604_020 Hb_004044_060 Hb_004044_060 Hb_004041_070--Hb_004044_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.1484 0 0 0.198522 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.35762 0 0.166801 0

CAGE analysis