Hb_000608_230

Information

Type -
Description -
Location Contig608: 98495-99919
Sequence    

Annotation

kegg
ID rcu:RCOM_1078440
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085764.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
swissprot
ID Q6NQ83
description Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1
trembl
ID B9RM74
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1078440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50835: 98970-99127 , PASA_asmbl_50836: 99312-99804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_230 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
2 Hb_005402_040 0.0661016154 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
3 Hb_140049_080 0.0699449211 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
4 Hb_178968_050 0.071649793 - - PREDICTED: probable serine incorporator [Jatropha curcas]
5 Hb_000331_580 0.0745054984 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
6 Hb_003216_090 0.0747584791 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
7 Hb_000823_030 0.0756182385 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
8 Hb_004109_370 0.0763988621 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_001673_050 0.0770940331 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
10 Hb_041327_010 0.0773105032 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
11 Hb_005568_040 0.0778933148 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
12 Hb_000003_100 0.0788489718 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
13 Hb_005357_260 0.0791372117 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
14 Hb_001953_120 0.0797304687 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
15 Hb_007747_170 0.0805583265 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
16 Hb_027472_220 0.0811757652 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
17 Hb_003124_160 0.0813460057 - - dynamin, putative [Ricinus communis]
18 Hb_003913_110 0.0819969896 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
19 Hb_001668_010 0.0827786635 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
20 Hb_000130_020 0.0831149047 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000608_230 Hb_000608_230 Hb_005402_040 Hb_005402_040 Hb_000608_230--Hb_005402_040 Hb_140049_080 Hb_140049_080 Hb_000608_230--Hb_140049_080 Hb_178968_050 Hb_178968_050 Hb_000608_230--Hb_178968_050 Hb_000331_580 Hb_000331_580 Hb_000608_230--Hb_000331_580 Hb_003216_090 Hb_003216_090 Hb_000608_230--Hb_003216_090 Hb_000823_030 Hb_000823_030 Hb_000608_230--Hb_000823_030 Hb_027472_220 Hb_027472_220 Hb_005402_040--Hb_027472_220 Hb_011202_020 Hb_011202_020 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_003124_160 Hb_003124_160 Hb_005402_040--Hb_003124_160 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_061878_010 Hb_061878_010 Hb_140049_080--Hb_061878_010 Hb_006355_090 Hb_006355_090 Hb_140049_080--Hb_006355_090 Hb_004109_370 Hb_004109_370 Hb_140049_080--Hb_004109_370 Hb_000037_220 Hb_000037_220 Hb_140049_080--Hb_000037_220 Hb_009615_170 Hb_009615_170 Hb_140049_080--Hb_009615_170 Hb_001318_020 Hb_001318_020 Hb_140049_080--Hb_001318_020 Hb_000130_020 Hb_000130_020 Hb_178968_050--Hb_000130_020 Hb_178968_050--Hb_140049_080 Hb_000365_030 Hb_000365_030 Hb_178968_050--Hb_000365_030 Hb_002686_040 Hb_002686_040 Hb_178968_050--Hb_002686_040 Hb_178968_050--Hb_004109_370 Hb_000008_240 Hb_000008_240 Hb_000331_580--Hb_000008_240 Hb_000003_100 Hb_000003_100 Hb_000331_580--Hb_000003_100 Hb_005568_040 Hb_005568_040 Hb_000331_580--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000331_580--Hb_002007_110 Hb_123531_010 Hb_123531_010 Hb_000331_580--Hb_123531_010 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_003216_090--Hb_000003_100 Hb_001951_170 Hb_001951_170 Hb_003216_090--Hb_001951_170 Hb_003216_090--Hb_000331_580 Hb_000003_410 Hb_000003_410 Hb_003216_090--Hb_000003_410 Hb_000665_230 Hb_000665_230 Hb_003216_090--Hb_000665_230 Hb_001904_030 Hb_001904_030 Hb_003216_090--Hb_001904_030 Hb_001047_200 Hb_001047_200 Hb_000823_030--Hb_001047_200 Hb_003142_040 Hb_003142_040 Hb_000823_030--Hb_003142_040 Hb_088144_020 Hb_088144_020 Hb_000823_030--Hb_088144_020 Hb_007426_060 Hb_007426_060 Hb_000823_030--Hb_007426_060 Hb_000184_150 Hb_000184_150 Hb_000823_030--Hb_000184_150 Hb_001171_030 Hb_001171_030 Hb_000823_030--Hb_001171_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18506 2.41792 1.3295 1.55664 1.83769 1.40392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.861548 0.495303 0.928686 2.51998 1.63248

CAGE analysis