Hb_000608_240

Information

Type -
Description -
Location Contig608: 101205-105124
Sequence    

Annotation

kegg
ID pop:POPTR_0019s08080g
description POPTRDRAFT_814507; eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein
nr
ID XP_002325904.1
description eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein [Populus trichocarpa]
swissprot
ID Q5ZL42
description Basic leucine zipper and W2 domain-containing protein 2 OS=Gallus gallus GN=BZW2 PE=2 SV=1
trembl
ID A9P9K5
description eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein OS=Populus trichocarpa GN=POPTR_0019s08080g PE=2 SV=1
Gene Ontology
ID GO:0003743
description basic leucine zipper and w2 domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50837: 101166-104236 , PASA_asmbl_50838: 103056-103157
cDNA
(Sanger)
(ID:Location)		 014_L23.ab1: 101166-103839

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_240 0.0 - - eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein [Populus trichocarpa]
2 Hb_004767_100 0.06472779 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
3 Hb_006332_010 0.094073113 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
4 Hb_005170_040 0.0979878757 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
5 Hb_000191_150 0.1035532764 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
6 Hb_000009_240 0.1041130074 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
7 Hb_004032_150 0.1043112508 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
8 Hb_000608_320 0.1076085993 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
9 Hb_000318_290 0.1084532547 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
10 Hb_007163_090 0.1097083609 - - PREDICTED: protein spt2-like [Jatropha curcas]
11 Hb_069738_010 0.1097500504 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
12 Hb_023344_030 0.1099494826 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
13 Hb_005333_070 0.1105848473 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011485_070 0.1159067625 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
15 Hb_000343_160 0.1161513888 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
16 Hb_003777_310 0.1168696874 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000116_410 0.1173970855 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
18 Hb_093084_060 0.1174425736 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
19 Hb_000185_040 0.1183149583 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
20 Hb_144528_010 0.1192432954 - - type II inositol 5-phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000608_240 Hb_000608_240 Hb_004767_100 Hb_004767_100 Hb_000608_240--Hb_004767_100 Hb_006332_010 Hb_006332_010 Hb_000608_240--Hb_006332_010 Hb_005170_040 Hb_005170_040 Hb_000608_240--Hb_005170_040 Hb_000191_150 Hb_000191_150 Hb_000608_240--Hb_000191_150 Hb_000009_240 Hb_000009_240 Hb_000608_240--Hb_000009_240 Hb_004032_150 Hb_004032_150 Hb_000608_240--Hb_004032_150 Hb_004767_100--Hb_004032_150 Hb_000318_290 Hb_000318_290 Hb_004767_100--Hb_000318_290 Hb_004767_100--Hb_005170_040 Hb_148644_010 Hb_148644_010 Hb_004767_100--Hb_148644_010 Hb_000205_300 Hb_000205_300 Hb_004767_100--Hb_000205_300 Hb_004447_060 Hb_004447_060 Hb_006332_010--Hb_004447_060 Hb_007163_090 Hb_007163_090 Hb_006332_010--Hb_007163_090 Hb_006332_010--Hb_148644_010 Hb_002811_360 Hb_002811_360 Hb_006332_010--Hb_002811_360 Hb_006332_010--Hb_004767_100 Hb_001301_200 Hb_001301_200 Hb_006332_010--Hb_001301_200 Hb_000608_320 Hb_000608_320 Hb_005170_040--Hb_000608_320 Hb_003777_310 Hb_003777_310 Hb_005170_040--Hb_003777_310 Hb_005170_040--Hb_000318_290 Hb_007059_010 Hb_007059_010 Hb_005170_040--Hb_007059_010 Hb_023344_030 Hb_023344_030 Hb_005170_040--Hb_023344_030 Hb_000116_410 Hb_000116_410 Hb_000191_150--Hb_000116_410 Hb_002903_060 Hb_002903_060 Hb_000191_150--Hb_002903_060 Hb_000343_120 Hb_000343_120 Hb_000191_150--Hb_000343_120 Hb_123352_020 Hb_123352_020 Hb_000191_150--Hb_123352_020 Hb_000205_100 Hb_000205_100 Hb_000191_150--Hb_000205_100 Hb_005731_130 Hb_005731_130 Hb_000191_150--Hb_005731_130 Hb_000009_240--Hb_000318_290 Hb_002391_270 Hb_002391_270 Hb_000009_240--Hb_002391_270 Hb_005914_080 Hb_005914_080 Hb_000009_240--Hb_005914_080 Hb_000009_240--Hb_004767_100 Hb_000009_240--Hb_003777_310 Hb_003940_040 Hb_003940_040 Hb_000009_240--Hb_003940_040 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_004032_150--Hb_000318_290 Hb_004032_150--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
128.448 178.298 42.1733 203.87 179.278 368.377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
150.431 207.401 221.494 193.545 65.7784

CAGE analysis