Hb_000608_310

Information

Type -
Description -
Location Contig608: 149466-155356
Sequence    

Annotation

kegg
ID rcu:RCOM_1077760
description Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1) (EC:6.4.1.2)
nr
ID XP_012085781.1
description PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q42533
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2
trembl
ID B9RM56
description Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1) OS=Ricinus communis GN=RCOM_1077760 PE=4 SV=1
Gene Ontology
ID GO:0044434
description biotin carboxyl carrier protein subunit of of het-accase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50855: 149468-155304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_310 0.0 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001484_070 0.0843113949 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007441_040 0.0854356551 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
4 Hb_009182_010 0.0881075895 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
5 Hb_003077_040 0.0901469179 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
6 Hb_001979_040 0.0901500843 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
7 Hb_000102_020 0.0918209368 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
8 Hb_001085_120 0.0925930484 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
9 Hb_001214_160 0.0930037143 - - 60S ribosomal protein L27B [Hevea brasiliensis]
10 Hb_001314_100 0.0980280264 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
11 Hb_001504_110 0.0982710864 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
12 Hb_101705_030 0.0982946845 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
13 Hb_002235_350 0.0986996266 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
14 Hb_006541_010 0.1003081814 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
15 Hb_009051_030 0.1013608841 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
16 Hb_144598_020 0.1016231846 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
17 Hb_000920_110 0.102254116 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
18 Hb_005731_170 0.1025271786 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
19 Hb_004055_070 0.1029049589 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
20 Hb_011628_040 0.1032450941 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]

Gene co-expression network

sample Hb_000608_310 Hb_000608_310 Hb_001484_070 Hb_001484_070 Hb_000608_310--Hb_001484_070 Hb_007441_040 Hb_007441_040 Hb_000608_310--Hb_007441_040 Hb_009182_010 Hb_009182_010 Hb_000608_310--Hb_009182_010 Hb_003077_040 Hb_003077_040 Hb_000608_310--Hb_003077_040 Hb_001979_040 Hb_001979_040 Hb_000608_310--Hb_001979_040 Hb_000102_020 Hb_000102_020 Hb_000608_310--Hb_000102_020 Hb_000920_110 Hb_000920_110 Hb_001484_070--Hb_000920_110 Hb_000453_120 Hb_000453_120 Hb_001484_070--Hb_000453_120 Hb_000261_140 Hb_000261_140 Hb_001484_070--Hb_000261_140 Hb_001484_070--Hb_001979_040 Hb_001085_120 Hb_001085_120 Hb_001484_070--Hb_001085_120 Hb_002056_050 Hb_002056_050 Hb_001484_070--Hb_002056_050 Hb_007441_040--Hb_000102_020 Hb_007441_040--Hb_009182_010 Hb_006541_010 Hb_006541_010 Hb_007441_040--Hb_006541_010 Hb_001814_050 Hb_001814_050 Hb_007441_040--Hb_001814_050 Hb_007012_060 Hb_007012_060 Hb_007441_040--Hb_007012_060 Hb_000656_170 Hb_000656_170 Hb_007441_040--Hb_000656_170 Hb_009182_010--Hb_000102_020 Hb_143766_010 Hb_143766_010 Hb_009182_010--Hb_143766_010 Hb_000982_090 Hb_000982_090 Hb_009182_010--Hb_000982_090 Hb_091433_020 Hb_091433_020 Hb_009182_010--Hb_091433_020 Hb_004157_030 Hb_004157_030 Hb_009182_010--Hb_004157_030 Hb_003077_040--Hb_001484_070 Hb_000103_010 Hb_000103_010 Hb_003077_040--Hb_000103_010 Hb_003077_040--Hb_001085_120 Hb_003077_040--Hb_000261_140 Hb_000086_280 Hb_000086_280 Hb_003077_040--Hb_000086_280 Hb_003077_040--Hb_000453_120 Hb_005511_160 Hb_005511_160 Hb_001979_040--Hb_005511_160 Hb_001979_040--Hb_000920_110 Hb_001780_040 Hb_001780_040 Hb_001979_040--Hb_001780_040 Hb_000731_190 Hb_000731_190 Hb_001979_040--Hb_000731_190 Hb_002235_350 Hb_002235_350 Hb_001979_040--Hb_002235_350 Hb_009051_030 Hb_009051_030 Hb_000102_020--Hb_009051_030 Hb_000102_020--Hb_000261_140 Hb_000102_020--Hb_000656_170 Hb_001214_160 Hb_001214_160 Hb_000102_020--Hb_001214_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.43641 3.59501 6.79733 4.55165 3.00427 10.0228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6628 21.2494 12.4445 5.47519 4.16206

CAGE analysis