Hb_000608_320

Information

Type -
Description -
Location Contig608: 156040-157601
Sequence    

Annotation

kegg
ID rcu:RCOM_1077750
description hypothetical protein
nr
ID XP_012085784.1
description PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18043 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50855: 149468-155304 , PASA_asmbl_50857: 156040-157664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_320 0.0 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
2 Hb_002027_290 0.0466281163 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
3 Hb_000318_290 0.0616757873 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
4 Hb_005170_040 0.0638386845 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
5 Hb_003777_310 0.0721248678 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002716_130 0.0722178091 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
7 Hb_002811_060 0.0722942375 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
8 Hb_012022_090 0.0776079238 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
9 Hb_000116_500 0.0781153822 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
10 Hb_005065_010 0.0794294064 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
11 Hb_001377_270 0.0801507736 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
12 Hb_000127_040 0.0804223319 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
13 Hb_001018_130 0.0833368642 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
14 Hb_002213_070 0.0845945153 - - epsilon-adaptin family protein [Populus trichocarpa]
15 Hb_000347_180 0.0846020291 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
16 Hb_005211_100 0.0852380118 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
17 Hb_001143_160 0.0855107737 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
18 Hb_007059_010 0.0858650471 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
19 Hb_005054_100 0.0874241409 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
20 Hb_000080_150 0.089184462 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_320 Hb_000608_320 Hb_002027_290 Hb_002027_290 Hb_000608_320--Hb_002027_290 Hb_000318_290 Hb_000318_290 Hb_000608_320--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_000608_320--Hb_005170_040 Hb_003777_310 Hb_003777_310 Hb_000608_320--Hb_003777_310 Hb_002716_130 Hb_002716_130 Hb_000608_320--Hb_002716_130 Hb_002811_060 Hb_002811_060 Hb_000608_320--Hb_002811_060 Hb_002027_290--Hb_000318_290 Hb_002740_180 Hb_002740_180 Hb_002027_290--Hb_002740_180 Hb_000127_040 Hb_000127_040 Hb_002027_290--Hb_000127_040 Hb_000343_120 Hb_000343_120 Hb_002027_290--Hb_000343_120 Hb_001199_100 Hb_001199_100 Hb_002027_290--Hb_001199_100 Hb_000318_290--Hb_003777_310 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_004032_150 Hb_004032_150 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100 Hb_005170_040--Hb_003777_310 Hb_005170_040--Hb_004767_100 Hb_005170_040--Hb_000318_290 Hb_007059_010 Hb_007059_010 Hb_005170_040--Hb_007059_010 Hb_023344_030 Hb_023344_030 Hb_005170_040--Hb_023344_030 Hb_002445_120 Hb_002445_120 Hb_003777_310--Hb_002445_120 Hb_023001_060 Hb_023001_060 Hb_003777_310--Hb_023001_060 Hb_003777_310--Hb_004032_150 Hb_004117_130 Hb_004117_130 Hb_002716_130--Hb_004117_130 Hb_000010_330 Hb_000010_330 Hb_002716_130--Hb_000010_330 Hb_000085_160 Hb_000085_160 Hb_002716_130--Hb_000085_160 Hb_000212_240 Hb_000212_240 Hb_002716_130--Hb_000212_240 Hb_006252_040 Hb_006252_040 Hb_002716_130--Hb_006252_040 Hb_007317_110 Hb_007317_110 Hb_002716_130--Hb_007317_110 Hb_012022_090 Hb_012022_090 Hb_002811_060--Hb_012022_090 Hb_005054_100 Hb_005054_100 Hb_002811_060--Hb_005054_100 Hb_000116_500 Hb_000116_500 Hb_002811_060--Hb_000116_500 Hb_003988_010 Hb_003988_010 Hb_002811_060--Hb_003988_010 Hb_006660_010 Hb_006660_010 Hb_002811_060--Hb_006660_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.8257 44.6672 20.6127 66.5527 70.3638 83.0966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.3178 40.7655 56.019 49.7647 34.2247

CAGE analysis