Hb_000608_370

Information

Type -
Description -
Location Contig608: 207948-210831
Sequence    

Annotation

kegg
ID rcu:RCOM_1077670
description acyl carrier protein, putative
nr
ID ABV08889.1
description acyl-carrier-protein [Triadica sebifera]
swissprot
ID O80800
description Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1
trembl
ID E6Y2N3
description Acyl carrier protein OS=Triadica sebifera GN=acp PE=2 SV=1
Gene Ontology
ID GO:0005759
description acyl carrier protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50863: 207989-210863 , PASA_asmbl_50864: 211440-216170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_370 0.0 - - acyl-carrier-protein [Triadica sebifera]
2 Hb_129204_030 0.0523826507 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
3 Hb_007416_030 0.0570331344 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
4 Hb_001047_230 0.0607503468 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000788_090 0.0620371242 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
6 Hb_000258_170 0.0683136764 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
7 Hb_002454_030 0.0685798211 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
8 Hb_001277_070 0.0700190772 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
9 Hb_021409_030 0.0732384333 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
10 Hb_000167_140 0.0757851527 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
11 Hb_004375_140 0.0778031083 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
12 Hb_001832_060 0.0780295897 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
13 Hb_003656_070 0.0785409055 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
14 Hb_004931_090 0.080785208 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
15 Hb_029866_060 0.082109104 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
16 Hb_000270_270 0.0835810661 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
17 Hb_001269_630 0.0866616882 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
18 Hb_005511_160 0.0871900084 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
19 Hb_002232_440 0.0880294892 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
20 Hb_011224_110 0.089195813 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]

Gene co-expression network

sample Hb_000608_370 Hb_000608_370 Hb_129204_030 Hb_129204_030 Hb_000608_370--Hb_129204_030 Hb_007416_030 Hb_007416_030 Hb_000608_370--Hb_007416_030 Hb_001047_230 Hb_001047_230 Hb_000608_370--Hb_001047_230 Hb_000788_090 Hb_000788_090 Hb_000608_370--Hb_000788_090 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_129204_030--Hb_001047_230 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_000240_090 Hb_000240_090 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070 Hb_002686_020 Hb_002686_020 Hb_007416_030--Hb_002686_020 Hb_007416_030--Hb_000788_090 Hb_002864_050 Hb_002864_050 Hb_007416_030--Hb_002864_050 Hb_007416_030--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_007416_030--Hb_003683_110 Hb_003656_070 Hb_003656_070 Hb_001047_230--Hb_003656_070 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_000334_210 Hb_000334_210 Hb_001047_230--Hb_000334_210 Hb_000788_090--Hb_001047_230 Hb_000788_090--Hb_003656_070 Hb_002110_120 Hb_002110_120 Hb_000788_090--Hb_002110_120 Hb_008173_090 Hb_008173_090 Hb_000788_090--Hb_008173_090 Hb_000258_170--Hb_021409_030 Hb_138585_060 Hb_138585_060 Hb_000258_170--Hb_138585_060 Hb_005511_160 Hb_005511_160 Hb_000258_170--Hb_005511_160 Hb_000258_170--Hb_000788_090 Hb_000258_170--Hb_001047_230 Hb_029866_060 Hb_029866_060 Hb_002454_030--Hb_029866_060 Hb_002454_030--Hb_001047_230 Hb_002454_030--Hb_003656_070 Hb_002454_030--Hb_000788_090 Hb_002454_030--Hb_129204_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.4548 48.3536 68.7296 43.0407 89.6211 65.2601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
122.156 217.539 146.042 39.0998 38.2181

CAGE analysis