Hb_000608_420

Information

Type -
Description -
Location Contig608: 250710-277035
Sequence    

Annotation

kegg
ID rcu:RCOM_1077610
description ATP binding protein, putative (EC:3.1.26.3)
nr
ID XP_012085800.1
description PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
swissprot
ID Q3EBC8
description Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2
trembl
ID B9RM41
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1077610 PE=4 SV=1
Gene Ontology
ID GO:0003723
description endoribonuclease dicer homolog 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50870: 251293-252932 , PASA_asmbl_50871: 255302-256663 , PASA_asmbl_50873: 259329-273459 , PASA_asmbl_50874: 272367-272465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_420 0.0 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
2 Hb_001881_020 0.0902088202 - - clathrin binding protein, putative [Ricinus communis]
3 Hb_000865_070 0.0971686139 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
4 Hb_000091_090 0.0976834218 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
5 Hb_011828_020 0.0989176635 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
6 Hb_004116_040 0.0999484715 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
7 Hb_000086_570 0.1007836537 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
8 Hb_001718_100 0.1048350002 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
9 Hb_003020_230 0.107091682 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
10 Hb_000522_080 0.1074485888 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
11 Hb_000089_160 0.108358748 - - 60S ribosomal protein L5B [Hevea brasiliensis]
12 Hb_003086_020 0.1105456528 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
13 Hb_021650_030 0.1107695949 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
14 Hb_002078_450 0.1125746619 - - nuclear transport factor, putative [Ricinus communis]
15 Hb_130291_010 0.1131630714 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
16 Hb_142898_010 0.1131961601 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002028_130 0.1141001785 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
18 Hb_002835_410 0.1156150911 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
19 Hb_000318_380 0.1160600022 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
20 Hb_004242_080 0.1188619705 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_420 Hb_000608_420 Hb_001881_020 Hb_001881_020 Hb_000608_420--Hb_001881_020 Hb_000865_070 Hb_000865_070 Hb_000608_420--Hb_000865_070 Hb_000091_090 Hb_000091_090 Hb_000608_420--Hb_000091_090 Hb_011828_020 Hb_011828_020 Hb_000608_420--Hb_011828_020 Hb_004116_040 Hb_004116_040 Hb_000608_420--Hb_004116_040 Hb_000086_570 Hb_000086_570 Hb_000608_420--Hb_000086_570 Hb_000671_150 Hb_000671_150 Hb_001881_020--Hb_000671_150 Hb_021650_030 Hb_021650_030 Hb_001881_020--Hb_021650_030 Hb_001881_020--Hb_000091_090 Hb_020178_070 Hb_020178_070 Hb_001881_020--Hb_020178_070 Hb_002411_200 Hb_002411_200 Hb_001881_020--Hb_002411_200 Hb_001881_020--Hb_000086_570 Hb_003226_280 Hb_003226_280 Hb_000865_070--Hb_003226_280 Hb_000089_160 Hb_000089_160 Hb_000865_070--Hb_000089_160 Hb_010560_040 Hb_010560_040 Hb_000865_070--Hb_010560_040 Hb_000030_100 Hb_000030_100 Hb_000865_070--Hb_000030_100 Hb_000363_200 Hb_000363_200 Hb_000865_070--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_000865_070--Hb_002078_460 Hb_000091_090--Hb_021650_030 Hb_003151_050 Hb_003151_050 Hb_000091_090--Hb_003151_050 Hb_000091_090--Hb_000086_570 Hb_000091_090--Hb_002411_200 Hb_000983_100 Hb_000983_100 Hb_000091_090--Hb_000983_100 Hb_000395_080 Hb_000395_080 Hb_011828_020--Hb_000395_080 Hb_000877_060 Hb_000877_060 Hb_011828_020--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_011828_020--Hb_001477_130 Hb_003020_230 Hb_003020_230 Hb_011828_020--Hb_003020_230 Hb_000613_140 Hb_000613_140 Hb_011828_020--Hb_000613_140 Hb_000923_050 Hb_000923_050 Hb_011828_020--Hb_000923_050 Hb_003086_020 Hb_003086_020 Hb_004116_040--Hb_003086_020 Hb_001235_070 Hb_001235_070 Hb_004116_040--Hb_001235_070 Hb_002025_320 Hb_002025_320 Hb_004116_040--Hb_002025_320 Hb_148209_120 Hb_148209_120 Hb_004116_040--Hb_148209_120 Hb_003086_110 Hb_003086_110 Hb_004116_040--Hb_003086_110 Hb_002078_450 Hb_002078_450 Hb_000086_570--Hb_002078_450 Hb_071736_020 Hb_071736_020 Hb_000086_570--Hb_071736_020 Hb_000086_570--Hb_021650_030 Hb_001427_120 Hb_001427_120 Hb_000086_570--Hb_001427_120 Hb_001718_100 Hb_001718_100 Hb_000086_570--Hb_001718_100 Hb_000086_570--Hb_002411_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6149 7.51266 1.8296 5.97445 22.1844 29.838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.2106 33.1008 27.6878 19.2516 2.52818

CAGE analysis