Hb_000608_450

Information

Type -
Description -
Location Contig608: 291772-292788
Sequence    

Annotation

kegg
ID rcu:RCOM_1077560
description ATP binding protein, putative
nr
ID XP_012085907.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID B9RM36
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1077560 PE=4 SV=1
Gene Ontology
ID GO:0032550
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_450 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
2 Hb_000920_360 0.1007122905 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
3 Hb_108884_020 0.1033134311 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
4 Hb_000286_190 0.1138655489 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
5 Hb_010926_030 0.1269500875 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
6 Hb_009510_060 0.1326054803 - - -
7 Hb_005797_030 0.1332407399 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
8 Hb_088916_010 0.1397273116 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
9 Hb_006326_030 0.1484321607 - - conserved hypothetical protein [Ricinus communis]
10 Hb_064482_010 0.1485438454 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001864_010 0.1501254778 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004200_040 0.1521667857 - - laccase, putative [Ricinus communis]
13 Hb_000684_020 0.1536437149 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_003900_050 0.1557553299 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
15 Hb_000149_090 0.1583756122 - - -
16 Hb_001104_280 0.1590072235 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
17 Hb_000740_130 0.1614808242 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
18 Hb_007894_260 0.1619669437 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_001105_200 0.1627615489 - - catalytic, putative [Ricinus communis]
20 Hb_029508_030 0.1631741774 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]

Gene co-expression network

sample Hb_000608_450 Hb_000608_450 Hb_000920_360 Hb_000920_360 Hb_000608_450--Hb_000920_360 Hb_108884_020 Hb_108884_020 Hb_000608_450--Hb_108884_020 Hb_000286_190 Hb_000286_190 Hb_000608_450--Hb_000286_190 Hb_010926_030 Hb_010926_030 Hb_000608_450--Hb_010926_030 Hb_009510_060 Hb_009510_060 Hb_000608_450--Hb_009510_060 Hb_005797_030 Hb_005797_030 Hb_000608_450--Hb_005797_030 Hb_000920_360--Hb_000286_190 Hb_000920_360--Hb_005797_030 Hb_029508_030 Hb_029508_030 Hb_000920_360--Hb_029508_030 Hb_088916_010 Hb_088916_010 Hb_000920_360--Hb_088916_010 Hb_001864_010 Hb_001864_010 Hb_000920_360--Hb_001864_010 Hb_000046_060 Hb_000046_060 Hb_108884_020--Hb_000046_060 Hb_009012_020 Hb_009012_020 Hb_108884_020--Hb_009012_020 Hb_108884_020--Hb_000286_190 Hb_004190_010 Hb_004190_010 Hb_108884_020--Hb_004190_010 Hb_000684_020 Hb_000684_020 Hb_108884_020--Hb_000684_020 Hb_000286_190--Hb_029508_030 Hb_000286_190--Hb_005797_030 Hb_000286_190--Hb_001864_010 Hb_004574_010 Hb_004574_010 Hb_000286_190--Hb_004574_010 Hb_010926_030--Hb_009510_060 Hb_000149_090 Hb_000149_090 Hb_010926_030--Hb_000149_090 Hb_004712_020 Hb_004712_020 Hb_010926_030--Hb_004712_020 Hb_012807_140 Hb_012807_140 Hb_010926_030--Hb_012807_140 Hb_001105_200 Hb_001105_200 Hb_010926_030--Hb_001105_200 Hb_002122_040 Hb_002122_040 Hb_010926_030--Hb_002122_040 Hb_009510_060--Hb_000149_090 Hb_009510_060--Hb_004712_020 Hb_009510_060--Hb_012807_140 Hb_064482_010 Hb_064482_010 Hb_009510_060--Hb_064482_010 Hb_009510_060--Hb_002122_040 Hb_005797_030--Hb_001864_010 Hb_002007_230 Hb_002007_230 Hb_005797_030--Hb_002007_230 Hb_001104_280 Hb_001104_280 Hb_005797_030--Hb_001104_280 Hb_003086_200 Hb_003086_200 Hb_005797_030--Hb_003086_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.230934 0 0.0602371 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.510123 0.0888287

CAGE analysis