Hb_000608_460

Information

Type -
Description -
Location Contig608: 294287-299136
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_460 0.0 - - -
2 Hb_014568_020 0.1427299457 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
3 Hb_002888_010 0.2080541754 - - -
4 Hb_000915_030 0.2107519735 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
5 Hb_004324_080 0.2257010621 - - -
6 Hb_181240_010 0.2281733753 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_004448_060 0.2430778145 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004734_050 0.2526335303 - - -
9 Hb_000046_160 0.2728447816 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
10 Hb_000258_450 0.2828013586 - - -
11 Hb_003005_040 0.2830889434 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000310_070 0.29161805 - - BnaA06g08330D [Brassica napus]
13 Hb_178063_010 0.3056117658 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
14 Hb_000363_150 0.3105774839 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
15 Hb_162633_010 0.3130014949 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
16 Hb_162033_010 0.314689164 - - -
17 Hb_003124_060 0.3156949625 - - Beta-ureidopropionase, putative [Ricinus communis]
18 Hb_026239_010 0.3270977291 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_132840_130 0.327126175 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X1 [Jatropha curcas]
20 Hb_006342_020 0.3305348336 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000608_460 Hb_000608_460 Hb_014568_020 Hb_014568_020 Hb_000608_460--Hb_014568_020 Hb_002888_010 Hb_002888_010 Hb_000608_460--Hb_002888_010 Hb_000915_030 Hb_000915_030 Hb_000608_460--Hb_000915_030 Hb_004324_080 Hb_004324_080 Hb_000608_460--Hb_004324_080 Hb_181240_010 Hb_181240_010 Hb_000608_460--Hb_181240_010 Hb_004448_060 Hb_004448_060 Hb_000608_460--Hb_004448_060 Hb_014568_020--Hb_000915_030 Hb_014568_020--Hb_181240_010 Hb_014568_020--Hb_002888_010 Hb_000363_150 Hb_000363_150 Hb_014568_020--Hb_000363_150 Hb_014568_020--Hb_004324_080 Hb_162633_010 Hb_162633_010 Hb_002888_010--Hb_162633_010 Hb_000310_070 Hb_000310_070 Hb_002888_010--Hb_000310_070 Hb_148209_060 Hb_148209_060 Hb_002888_010--Hb_148209_060 Hb_003144_050 Hb_003144_050 Hb_002888_010--Hb_003144_050 Hb_000915_030--Hb_181240_010 Hb_004734_050 Hb_004734_050 Hb_000915_030--Hb_004734_050 Hb_000915_030--Hb_000363_150 Hb_000915_030--Hb_004448_060 Hb_000046_160 Hb_000046_160 Hb_004324_080--Hb_000046_160 Hb_004324_080--Hb_181240_010 Hb_003005_040 Hb_003005_040 Hb_004324_080--Hb_003005_040 Hb_004324_080--Hb_004734_050 Hb_181240_010--Hb_004734_050 Hb_181240_010--Hb_003005_040 Hb_004448_060--Hb_004734_050 Hb_000258_450 Hb_000258_450 Hb_004448_060--Hb_000258_450 Hb_006342_020 Hb_006342_020 Hb_004448_060--Hb_006342_020 Hb_007904_170 Hb_007904_170 Hb_004448_060--Hb_007904_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.184208 0.289373 0.234475 0 0.25777

CAGE analysis