Hb_000609_110

Information

Type -
Description -
Location Contig609: 171796-178540
Sequence    

Annotation

kegg
ID tcc:TCM_038107
description Methyl-CPG-binding domain 10, putative isoform 1
nr
ID XP_012078815.1
description PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
swissprot
ID Q9XI36
description Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana GN=MBD10 PE=1 SV=1
trembl
ID A0A067KJI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13350 PE=4 SV=1
Gene Ontology
ID GO:0005634
description methyl- -binding domain-containing protein 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50884: 171798-178473 , PASA_asmbl_50887: 175551-175743 , PASA_asmbl_50888: 173677-173795
cDNA
(Sanger)
(ID:Location)		 019_B14.ab1: 172477-178466

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000609_110 0.0 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
2 Hb_005694_130 0.0669902565 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
3 Hb_027380_210 0.0716547928 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
4 Hb_000836_540 0.0774370859 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
5 Hb_003001_070 0.0933372773 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
6 Hb_003992_180 0.0999303877 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
7 Hb_000805_200 0.1004907644 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
8 Hb_161549_010 0.1021672322 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002056_100 0.1062569952 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
10 Hb_012305_140 0.108821706 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
11 Hb_000453_230 0.109192352 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_010775_010 0.1116771284 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
13 Hb_001369_030 0.1119849229 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
14 Hb_006615_030 0.1142046753 - - prolyl oligopeptidase family protein [Populus trichocarpa]
15 Hb_002249_030 0.1162935626 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
16 Hb_005885_030 0.117427172 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_007849_050 0.1183963861 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
18 Hb_003925_060 0.1188646196 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
19 Hb_005873_020 0.1210426536 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
20 Hb_001488_210 0.1213888846 - - PREDICTED: protein RIK [Jatropha curcas]

Gene co-expression network

sample Hb_000609_110 Hb_000609_110 Hb_005694_130 Hb_005694_130 Hb_000609_110--Hb_005694_130 Hb_027380_210 Hb_027380_210 Hb_000609_110--Hb_027380_210 Hb_000836_540 Hb_000836_540 Hb_000609_110--Hb_000836_540 Hb_003001_070 Hb_003001_070 Hb_000609_110--Hb_003001_070 Hb_003992_180 Hb_003992_180 Hb_000609_110--Hb_003992_180 Hb_000805_200 Hb_000805_200 Hb_000609_110--Hb_000805_200 Hb_005694_130--Hb_003001_070 Hb_012305_140 Hb_012305_140 Hb_005694_130--Hb_012305_140 Hb_005694_130--Hb_003992_180 Hb_000454_140 Hb_000454_140 Hb_005694_130--Hb_000454_140 Hb_005694_130--Hb_000805_200 Hb_161549_010 Hb_161549_010 Hb_027380_210--Hb_161549_010 Hb_000453_230 Hb_000453_230 Hb_027380_210--Hb_000453_230 Hb_027380_210--Hb_005694_130 Hb_027380_210--Hb_000836_540 Hb_000212_300 Hb_000212_300 Hb_027380_210--Hb_000212_300 Hb_000836_540--Hb_005694_130 Hb_001369_030 Hb_001369_030 Hb_000836_540--Hb_001369_030 Hb_003925_060 Hb_003925_060 Hb_000836_540--Hb_003925_060 Hb_000836_540--Hb_000453_230 Hb_002056_100 Hb_002056_100 Hb_000836_540--Hb_002056_100 Hb_007849_050 Hb_007849_050 Hb_003001_070--Hb_007849_050 Hb_003001_070--Hb_000454_140 Hb_003001_070--Hb_012305_140 Hb_003001_070--Hb_003992_180 Hb_030545_030 Hb_030545_030 Hb_003992_180--Hb_030545_030 Hb_006615_030 Hb_006615_030 Hb_003992_180--Hb_006615_030 Hb_003992_180--Hb_012305_140 Hb_004526_010 Hb_004526_010 Hb_003992_180--Hb_004526_010 Hb_001558_060 Hb_001558_060 Hb_003992_180--Hb_001558_060 Hb_000805_200--Hb_000836_540 Hb_000805_200--Hb_027380_210 Hb_000805_200--Hb_003001_070 Hb_001571_030 Hb_001571_030 Hb_000805_200--Hb_001571_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.8748 105.61 92.707 28.9715 24.3877 26.562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5604 12.2112 12.104 25.7812 67.8389

CAGE analysis