Hb_000610_010

Information

Type -
Description -
Location Contig610: 820-3090
Sequence    

Annotation

kegg
ID mus:103985461
description SKP1-like protein 1B
nr
ID XP_009401439.1
description PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
swissprot
ID Q39255
description SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1
trembl
ID A5C7K8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g02500 PE=4 SV=1
Gene Ontology
ID GO:0009793
description skp1-like protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50975: 878-3009 , PASA_asmbl_50976: 1387-1951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000610_010 0.0 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
2 Hb_000009_530 0.0413382624 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
3 Hb_004093_090 0.0558365319 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
4 Hb_003687_230 0.0572038474 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
5 Hb_000107_190 0.0660994281 - - 50S ribosomal protein L20 [Hevea brasiliensis]
6 Hb_073973_130 0.0667468803 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
7 Hb_003292_040 0.0671910204 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
8 Hb_002296_050 0.0698028699 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
9 Hb_058972_010 0.0725329072 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
10 Hb_005588_030 0.0741824704 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
11 Hb_003935_020 0.0766979931 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_120410_010 0.076846124 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
13 Hb_004785_190 0.0776230531 - - PHD finger family protein [Populus trichocarpa]
14 Hb_000144_100 0.0785814882 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
15 Hb_011970_030 0.0818499605 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
16 Hb_002192_080 0.0821225978 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
17 Hb_010315_060 0.0829451867 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
18 Hb_027428_010 0.0830057453 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
19 Hb_004116_060 0.0831195339 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
20 Hb_000286_070 0.0835073966 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000610_010 Hb_000610_010 Hb_000009_530 Hb_000009_530 Hb_000610_010--Hb_000009_530 Hb_004093_090 Hb_004093_090 Hb_000610_010--Hb_004093_090 Hb_003687_230 Hb_003687_230 Hb_000610_010--Hb_003687_230 Hb_000107_190 Hb_000107_190 Hb_000610_010--Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000610_010--Hb_073973_130 Hb_003292_040 Hb_003292_040 Hb_000610_010--Hb_003292_040 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_000009_530--Hb_003687_230 Hb_000009_530--Hb_004093_090 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_000009_530--Hb_003292_040 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_120410_010 Hb_120410_010 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_003687_230--Hb_003292_040 Hb_000926_310 Hb_000926_310 Hb_003687_230--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040 Hb_000107_190--Hb_073973_130 Hb_002296_050 Hb_002296_050 Hb_000107_190--Hb_002296_050 Hb_002192_080 Hb_002192_080 Hb_000107_190--Hb_002192_080 Hb_058972_010 Hb_058972_010 Hb_000107_190--Hb_058972_010 Hb_005337_090 Hb_005337_090 Hb_000107_190--Hb_005337_090 Hb_027428_010 Hb_027428_010 Hb_073973_130--Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_073973_130--Hb_002872_030 Hb_022132_050 Hb_022132_050 Hb_073973_130--Hb_022132_050 Hb_073973_130--Hb_005337_090 Hb_001564_130 Hb_001564_130 Hb_003292_040--Hb_001564_130 Hb_011970_030 Hb_011970_030 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
185.668 126.24 183.755 107.203 171.495 140.41
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
140.921 213.727 91.1951 75.3384 62.381

CAGE analysis