Hb_000610_020

Information

Type -
Description -
Location Contig610: 942-1289
Sequence    

Annotation

kegg
ID -
description -
nr
ID ACU19127.1
description unknown [Glycine max]
swissprot
ID -
description -
trembl
ID C6TBC5
description Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50974: 1030-42527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000610_020 0.0 - - unknown [Glycine max]
2 Hb_147996_010 0.2163852176 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
3 Hb_010921_090 0.2189509566 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
4 Hb_000787_190 0.2476716651 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
5 Hb_001584_010 0.2497290831 - - kelch repeat protein, putative [Ricinus communis]
6 Hb_002553_160 0.258030645 - - PREDICTED: uncharacterized protein LOC104590935 [Nelumbo nucifera]
7 Hb_000130_060 0.2605617812 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
8 Hb_001486_150 0.2625727904 - - -
9 Hb_003299_010 0.264414726 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_011861_110 0.2661078917 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
11 Hb_004976_060 0.2676493734 - - -
12 Hb_001373_020 0.2705386246 - - -
13 Hb_006615_040 0.2734316659 - - monoxygenase, putative [Ricinus communis]
14 Hb_000977_010 0.2738699298 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
15 Hb_003525_020 0.2758821557 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005839_100 0.2782904372 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
17 Hb_002903_130 0.2824576534 - - epoxide hydrolase, putative [Ricinus communis]
18 Hb_005147_040 0.282665251 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
19 Hb_007253_040 0.2826909171 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
20 Hb_004286_030 0.2843089406 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]

Gene co-expression network

sample Hb_000610_020 Hb_000610_020 Hb_147996_010 Hb_147996_010 Hb_000610_020--Hb_147996_010 Hb_010921_090 Hb_010921_090 Hb_000610_020--Hb_010921_090 Hb_000787_190 Hb_000787_190 Hb_000610_020--Hb_000787_190 Hb_001584_010 Hb_001584_010 Hb_000610_020--Hb_001584_010 Hb_002553_160 Hb_002553_160 Hb_000610_020--Hb_002553_160 Hb_000130_060 Hb_000130_060 Hb_000610_020--Hb_000130_060 Hb_029393_020 Hb_029393_020 Hb_147996_010--Hb_029393_020 Hb_147996_010--Hb_010921_090 Hb_001486_140 Hb_001486_140 Hb_147996_010--Hb_001486_140 Hb_002367_120 Hb_002367_120 Hb_147996_010--Hb_002367_120 Hb_006615_040 Hb_006615_040 Hb_147996_010--Hb_006615_040 Hb_011861_110 Hb_011861_110 Hb_010921_090--Hb_011861_110 Hb_001486_150 Hb_001486_150 Hb_010921_090--Hb_001486_150 Hb_004007_120 Hb_004007_120 Hb_010921_090--Hb_004007_120 Hb_004162_010 Hb_004162_010 Hb_010921_090--Hb_004162_010 Hb_073096_010 Hb_073096_010 Hb_010921_090--Hb_073096_010 Hb_000022_180 Hb_000022_180 Hb_000787_190--Hb_000022_180 Hb_005203_020 Hb_005203_020 Hb_000787_190--Hb_005203_020 Hb_004108_170 Hb_004108_170 Hb_000787_190--Hb_004108_170 Hb_000123_330 Hb_000123_330 Hb_000787_190--Hb_000123_330 Hb_029977_050 Hb_029977_050 Hb_000787_190--Hb_029977_050 Hb_003155_020 Hb_003155_020 Hb_000787_190--Hb_003155_020 Hb_000189_120 Hb_000189_120 Hb_001584_010--Hb_000189_120 Hb_008175_030 Hb_008175_030 Hb_001584_010--Hb_008175_030 Hb_003299_010 Hb_003299_010 Hb_001584_010--Hb_003299_010 Hb_000778_020 Hb_000778_020 Hb_001584_010--Hb_000778_020 Hb_000007_160 Hb_000007_160 Hb_001584_010--Hb_000007_160 Hb_003525_020 Hb_003525_020 Hb_001584_010--Hb_003525_020 Hb_001373_020 Hb_001373_020 Hb_002553_160--Hb_001373_020 Hb_141142_010 Hb_141142_010 Hb_002553_160--Hb_141142_010 Hb_002553_160--Hb_011861_110 Hb_002553_160--Hb_001584_010 Hb_004976_060 Hb_004976_060 Hb_002553_160--Hb_004976_060 Hb_003175_020 Hb_003175_020 Hb_002553_160--Hb_003175_020 Hb_000362_110 Hb_000362_110 Hb_000130_060--Hb_000362_110 Hb_002370_030 Hb_002370_030 Hb_000130_060--Hb_002370_030 Hb_026337_010 Hb_026337_010 Hb_000130_060--Hb_026337_010 Hb_003640_030 Hb_003640_030 Hb_000130_060--Hb_003640_030 Hb_004724_120 Hb_004724_120 Hb_000130_060--Hb_004724_120 Hb_007426_140 Hb_007426_140 Hb_000130_060--Hb_007426_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110993 1.92352 0.557877 0.559707 0.209954 0.939706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.416031 0 1.5713 0

CAGE analysis