Hb_000610_050

Information

Type -
Description -
Location Contig610: 40365-42590
Sequence    

Annotation

kegg
ID rcu:RCOM_1598810
description skp1, putative
nr
ID XP_002510576.1
description skp1, putative [Ricinus communis]
swissprot
ID Q9SL93
description SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1
trembl
ID B9R8D3
description Skp1, putative OS=Ricinus communis GN=RCOM_1598810 PE=4 SV=1
Gene Ontology
ID GO:0009793
description skp1-like protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50973: 40281-42579 , PASA_asmbl_50977: 37967-39583
cDNA
(Sanger)
(ID:Location)		 025_E16.ab1: 40381-42476 , 032_N18.ab1: 40306-42418 , 038_N04.ab1: 40381-42475 , 038_P04.ab1: 40281-42497 , 047_I07.ab1: 40381-42475

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000610_050 0.0 - - skp1, putative [Ricinus communis]
2 Hb_024071_020 0.0532297871 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
3 Hb_027472_040 0.0642250597 - - SKP1 [Hevea brasiliensis]
4 Hb_002893_050 0.0723831369 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
5 Hb_007875_030 0.0749335234 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
6 Hb_000796_210 0.0775035806 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000342_100 0.0776730228 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
8 Hb_003780_030 0.0786130353 - - PREDICTED: protein CMSS1 [Jatropha curcas]
9 Hb_001140_370 0.0804660782 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
10 Hb_002078_140 0.0819084597 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
11 Hb_003126_050 0.0823304509 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
12 Hb_001221_100 0.0832887105 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
13 Hb_003428_030 0.0838953744 - - tRNA, putative [Ricinus communis]
14 Hb_005054_350 0.0860262979 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
15 Hb_000172_320 0.0864339231 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
16 Hb_124953_020 0.086831397 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
17 Hb_002043_130 0.0869083769 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
18 Hb_007423_040 0.0870892994 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
19 Hb_004800_230 0.0875295918 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
20 Hb_005365_030 0.0882410806 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]

Gene co-expression network

sample Hb_000610_050 Hb_000610_050 Hb_024071_020 Hb_024071_020 Hb_000610_050--Hb_024071_020 Hb_027472_040 Hb_027472_040 Hb_000610_050--Hb_027472_040 Hb_002893_050 Hb_002893_050 Hb_000610_050--Hb_002893_050 Hb_007875_030 Hb_007875_030 Hb_000610_050--Hb_007875_030 Hb_000796_210 Hb_000796_210 Hb_000610_050--Hb_000796_210 Hb_000342_100 Hb_000342_100 Hb_000610_050--Hb_000342_100 Hb_001140_370 Hb_001140_370 Hb_024071_020--Hb_001140_370 Hb_003126_050 Hb_003126_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030 Hb_003125_200 Hb_003125_200 Hb_027472_040--Hb_003125_200 Hb_001504_020 Hb_001504_020 Hb_027472_040--Hb_001504_020 Hb_029388_020 Hb_029388_020 Hb_027472_040--Hb_029388_020 Hb_000457_100 Hb_000457_100 Hb_027472_040--Hb_000457_100 Hb_007576_080 Hb_007576_080 Hb_027472_040--Hb_007576_080 Hb_002893_050--Hb_024071_020 Hb_002893_050--Hb_007875_030 Hb_002893_050--Hb_001140_370 Hb_002893_050--Hb_000342_100 Hb_000217_030 Hb_000217_030 Hb_002893_050--Hb_000217_030 Hb_003878_010 Hb_003878_010 Hb_007875_030--Hb_003878_010 Hb_007875_030--Hb_024071_020 Hb_001047_240 Hb_001047_240 Hb_007875_030--Hb_001047_240 Hb_007875_030--Hb_001140_370 Hb_000796_210--Hb_003428_030 Hb_112798_020 Hb_112798_020 Hb_000796_210--Hb_112798_020 Hb_000032_270 Hb_000032_270 Hb_000796_210--Hb_000032_270 Hb_000796_210--Hb_007576_080 Hb_002245_030 Hb_002245_030 Hb_000796_210--Hb_002245_030 Hb_000342_100--Hb_001140_370 Hb_062226_140 Hb_062226_140 Hb_000342_100--Hb_062226_140 Hb_000003_080 Hb_000003_080 Hb_000342_100--Hb_000003_080 Hb_000342_100--Hb_024071_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
177.082 131.513 133.397 202.701 193.106 209.472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
250.016 377.314 131.147 180.826 67.0616

CAGE analysis