Hb_000612_070

Information

Type -
Description -
Location Contig612: 95340-95660
Sequence    

Annotation

kegg
ID rcu:RCOM_1318690
description hypothetical protein
nr
ID XP_002529264.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STE5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1318690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000612_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001922_040 0.0901907373 - - reticulon family protein [Populus trichocarpa]
3 Hb_000340_480 0.1270729369 - - -
4 Hb_004375_060 0.1603212982 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
5 Hb_002081_100 0.1714719917 - - -
6 Hb_004025_030 0.1734691441 - - -
7 Hb_003507_040 0.182433504 - - hypothetical protein RCOM_1685970 [Ricinus communis]
8 Hb_001513_020 0.1975030751 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
9 Hb_000463_050 0.2049700022 - - histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
10 Hb_000061_410 0.2055304565 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_064201_010 0.2099680995 - - hypothetical protein RCOM_1685970 [Ricinus communis]
12 Hb_002188_100 0.2122633479 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003376_170 0.213465398 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
14 Hb_001712_050 0.2152799956 - - PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
15 Hb_027445_060 0.2156103104 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
16 Hb_077562_040 0.2172367121 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
17 Hb_003813_100 0.2195405754 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
18 Hb_005496_060 0.2226819136 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
19 Hb_178345_010 0.2241345661 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
20 Hb_024505_030 0.2245960598 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000612_070 Hb_000612_070 Hb_001922_040 Hb_001922_040 Hb_000612_070--Hb_001922_040 Hb_000340_480 Hb_000340_480 Hb_000612_070--Hb_000340_480 Hb_004375_060 Hb_004375_060 Hb_000612_070--Hb_004375_060 Hb_002081_100 Hb_002081_100 Hb_000612_070--Hb_002081_100 Hb_004025_030 Hb_004025_030 Hb_000612_070--Hb_004025_030 Hb_003507_040 Hb_003507_040 Hb_000612_070--Hb_003507_040 Hb_000463_050 Hb_000463_050 Hb_001922_040--Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_001922_040--Hb_024505_030 Hb_002188_100 Hb_002188_100 Hb_001922_040--Hb_002188_100 Hb_001712_050 Hb_001712_050 Hb_001922_040--Hb_001712_050 Hb_001922_040--Hb_000340_480 Hb_000340_480--Hb_002081_100 Hb_000340_480--Hb_004375_060 Hb_005496_060 Hb_005496_060 Hb_000340_480--Hb_005496_060 Hb_004449_010 Hb_004449_010 Hb_000340_480--Hb_004449_010 Hb_002835_190 Hb_002835_190 Hb_000340_480--Hb_002835_190 Hb_004375_060--Hb_002081_100 Hb_178345_010 Hb_178345_010 Hb_004375_060--Hb_178345_010 Hb_001504_170 Hb_001504_170 Hb_004375_060--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_004375_060--Hb_013479_020 Hb_004375_060--Hb_004025_030 Hb_064201_010 Hb_064201_010 Hb_002081_100--Hb_064201_010 Hb_000329_620 Hb_000329_620 Hb_002081_100--Hb_000329_620 Hb_002081_100--Hb_178345_010 Hb_000061_410 Hb_000061_410 Hb_002081_100--Hb_000061_410 Hb_077562_040 Hb_077562_040 Hb_004025_030--Hb_077562_040 Hb_000184_120 Hb_000184_120 Hb_004025_030--Hb_000184_120 Hb_023675_010 Hb_023675_010 Hb_004025_030--Hb_023675_010 Hb_000563_530 Hb_000563_530 Hb_004025_030--Hb_000563_530 Hb_027445_060 Hb_027445_060 Hb_004025_030--Hb_027445_060 Hb_003507_040--Hb_013479_020 Hb_003813_100 Hb_003813_100 Hb_003507_040--Hb_003813_100 Hb_003507_040--Hb_027445_060 Hb_000155_080 Hb_000155_080 Hb_003507_040--Hb_000155_080 Hb_019654_070 Hb_019654_070 Hb_003507_040--Hb_019654_070 Hb_000172_610 Hb_000172_610 Hb_003507_040--Hb_000172_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.45367 0 0.455988 0 11.9907 19.9177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1603 3.9964 1.10191 0.228359 0

CAGE analysis