Hb_000613_040

Information

Type -
Description -
Location Contig613: 18727-19126
Sequence    

Annotation

kegg
ID rcu:RCOM_0691190
description hypothetical protein
nr
ID XP_002532214.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1U5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0691190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51072: 19816-55786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007229_030 0.2007631691 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Jatropha curcas]
3 Hb_027472_130 0.2220101778 - - Cytochrome P450 [Theobroma cacao]
4 Hb_000205_150 0.2346509863 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
5 Hb_000010_130 0.2389209225 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic [Pyrus x bretschneideri]
6 Hb_000313_290 0.257334267 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000318_240 0.2585343117 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003026_030 0.2585612214 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
9 Hb_002960_110 0.2632560589 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
10 Hb_001269_510 0.2734839954 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
11 Hb_011639_080 0.2779150044 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
12 Hb_000424_070 0.2800565886 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
13 Hb_154114_030 0.2863012505 - - amino acid binding protein, putative [Ricinus communis]
14 Hb_000418_090 0.2867722542 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_004176_060 0.2889668875 - - -
16 Hb_000264_180 0.2915625927 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
17 Hb_005194_040 0.2934965312 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_000243_090 0.2957871804 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
19 Hb_002272_040 0.3008893656 - - hypothetical protein POPTR_0013s02610g, partial [Populus trichocarpa]
20 Hb_002450_140 0.3025875033 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_000613_040 Hb_000613_040 Hb_007229_030 Hb_007229_030 Hb_000613_040--Hb_007229_030 Hb_027472_130 Hb_027472_130 Hb_000613_040--Hb_027472_130 Hb_000205_150 Hb_000205_150 Hb_000613_040--Hb_000205_150 Hb_000010_130 Hb_000010_130 Hb_000613_040--Hb_000010_130 Hb_000313_290 Hb_000313_290 Hb_000613_040--Hb_000313_290 Hb_000318_240 Hb_000318_240 Hb_000613_040--Hb_000318_240 Hb_007229_030--Hb_000010_130 Hb_001352_080 Hb_001352_080 Hb_007229_030--Hb_001352_080 Hb_000424_070 Hb_000424_070 Hb_007229_030--Hb_000424_070 Hb_002960_110 Hb_002960_110 Hb_007229_030--Hb_002960_110 Hb_001959_240 Hb_001959_240 Hb_007229_030--Hb_001959_240 Hb_002498_170 Hb_002498_170 Hb_007229_030--Hb_002498_170 Hb_001269_510 Hb_001269_510 Hb_027472_130--Hb_001269_510 Hb_027472_130--Hb_002960_110 Hb_000058_050 Hb_000058_050 Hb_027472_130--Hb_000058_050 Hb_131864_030 Hb_131864_030 Hb_027472_130--Hb_131864_030 Hb_000189_390 Hb_000189_390 Hb_027472_130--Hb_000189_390 Hb_020156_060 Hb_020156_060 Hb_000205_150--Hb_020156_060 Hb_000243_090 Hb_000243_090 Hb_000205_150--Hb_000243_090 Hb_011639_080 Hb_011639_080 Hb_000205_150--Hb_011639_080 Hb_154114_030 Hb_154114_030 Hb_000205_150--Hb_154114_030 Hb_006913_090 Hb_006913_090 Hb_000205_150--Hb_006913_090 Hb_015292_040 Hb_015292_040 Hb_000010_130--Hb_015292_040 Hb_000010_130--Hb_000424_070 Hb_000010_130--Hb_000313_290 Hb_030131_020 Hb_030131_020 Hb_000010_130--Hb_030131_020 Hb_000418_090 Hb_000418_090 Hb_000010_130--Hb_000418_090 Hb_006618_070 Hb_006618_070 Hb_000010_130--Hb_006618_070 Hb_000313_290--Hb_000418_090 Hb_001624_040 Hb_001624_040 Hb_000313_290--Hb_001624_040 Hb_000331_340 Hb_000331_340 Hb_000313_290--Hb_000331_340 Hb_003683_030 Hb_003683_030 Hb_000313_290--Hb_003683_030 Hb_001250_040 Hb_001250_040 Hb_000313_290--Hb_001250_040 Hb_002686_330 Hb_002686_330 Hb_000318_240--Hb_002686_330 Hb_008725_140 Hb_008725_140 Hb_000318_240--Hb_008725_140 Hb_003026_030 Hb_003026_030 Hb_000318_240--Hb_003026_030 Hb_000189_430 Hb_000189_430 Hb_000318_240--Hb_000189_430 Hb_000318_240--Hb_001269_510 Hb_000997_150 Hb_000997_150 Hb_000318_240--Hb_000997_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.240038 0.560398 3.6644 0.240495 3.08618 0.587674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246205 0 0 0.340116 1.30735

CAGE analysis