Hb_000613_050

Information

Type -
Description -
Location Contig613: 19832-26169
Sequence    

Annotation

kegg
ID rcu:RCOM_0691200
description hypothetical protein
nr
ID XP_012081521.1
description PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4H9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18527 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51072: 19816-55786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_050 0.0 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
2 Hb_001343_040 0.0488120585 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
3 Hb_000592_030 0.0544481694 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
4 Hb_000008_290 0.0593771128 - - PREDICTED: protein SAND [Jatropha curcas]
5 Hb_002213_070 0.0604067583 - - epsilon-adaptin family protein [Populus trichocarpa]
6 Hb_001199_100 0.0621632524 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
7 Hb_002815_030 0.0623938482 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
8 Hb_000617_180 0.0636221783 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
9 Hb_004935_030 0.0664459972 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
10 Hb_000205_100 0.0690970715 - - PREDICTED: exportin-4 [Jatropha curcas]
11 Hb_000590_050 0.0691139661 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
12 Hb_123903_010 0.069802702 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
13 Hb_001449_040 0.0705207859 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
14 Hb_001814_030 0.0705264921 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
15 Hb_056691_060 0.0708537052 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
16 Hb_000127_040 0.0717021658 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
17 Hb_007576_110 0.0736155637 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
18 Hb_009175_020 0.0739137613 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
19 Hb_003411_040 0.0744317327 - - unnamed protein product [Coffea canephora]
20 Hb_000225_040 0.0744490643 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]

Gene co-expression network

sample Hb_000613_050 Hb_000613_050 Hb_001343_040 Hb_001343_040 Hb_000613_050--Hb_001343_040 Hb_000592_030 Hb_000592_030 Hb_000613_050--Hb_000592_030 Hb_000008_290 Hb_000008_290 Hb_000613_050--Hb_000008_290 Hb_002213_070 Hb_002213_070 Hb_000613_050--Hb_002213_070 Hb_001199_100 Hb_001199_100 Hb_000613_050--Hb_001199_100 Hb_002815_030 Hb_002815_030 Hb_000613_050--Hb_002815_030 Hb_001343_040--Hb_002815_030 Hb_001343_040--Hb_000592_030 Hb_000395_070 Hb_000395_070 Hb_001343_040--Hb_000395_070 Hb_001814_030 Hb_001814_030 Hb_001343_040--Hb_001814_030 Hb_012395_140 Hb_012395_140 Hb_001343_040--Hb_012395_140 Hb_020378_030 Hb_020378_030 Hb_000592_030--Hb_020378_030 Hb_000592_030--Hb_002815_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_000008_290--Hb_002815_030 Hb_000008_290--Hb_000592_030 Hb_000890_060 Hb_000890_060 Hb_000008_290--Hb_000890_060 Hb_000617_180 Hb_000617_180 Hb_000008_290--Hb_000617_180 Hb_123903_010 Hb_123903_010 Hb_000008_290--Hb_123903_010 Hb_000127_040 Hb_000127_040 Hb_002213_070--Hb_000127_040 Hb_001492_020 Hb_001492_020 Hb_002213_070--Hb_001492_020 Hb_002110_190 Hb_002110_190 Hb_002213_070--Hb_002110_190 Hb_000789_310 Hb_000789_310 Hb_002213_070--Hb_000789_310 Hb_000890_210 Hb_000890_210 Hb_002213_070--Hb_000890_210 Hb_003253_040 Hb_003253_040 Hb_001199_100--Hb_003253_040 Hb_000343_120 Hb_000343_120 Hb_001199_100--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_001199_100--Hb_000166_130 Hb_009545_100 Hb_009545_100 Hb_001199_100--Hb_009545_100 Hb_172632_080 Hb_172632_080 Hb_001199_100--Hb_172632_080 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_002815_030--Hb_012395_140 Hb_002815_030--Hb_000395_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.115 10.3198 6.42724 11.1774 11.9956 16.2435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0007 9.04416 9.73462 15.3781 10.9176

CAGE analysis