Hb_000613_080

Information

Type -
Description -
Location Contig613: 52839-55955
Sequence    

Annotation

kegg
ID mdm:103429921
description uncharacterized LOC103429921
nr
ID XP_009765586.1
description PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A059BX12
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03678 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51072: 19816-55786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_080 0.0 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
2 Hb_001617_060 0.0479327314 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
3 Hb_003966_030 0.0553793981 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
4 Hb_174821_010 0.0671929939 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
5 Hb_003449_070 0.0698111158 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
6 Hb_003044_020 0.0706711074 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
7 Hb_000922_370 0.070899989 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
8 Hb_000470_070 0.0736197786 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
9 Hb_000347_130 0.0753233577 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
10 Hb_004102_140 0.0757864404 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003362_070 0.0764091046 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
12 Hb_002329_040 0.0771685063 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
13 Hb_001034_070 0.0793875531 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000785_040 0.0798787152 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
15 Hb_000283_070 0.0813435408 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
16 Hb_011716_020 0.0833347073 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
17 Hb_067345_010 0.0846034154 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
18 Hb_000160_290 0.0848036785 - - unnamed protein product [Vitis vinifera]
19 Hb_000600_070 0.0852763795 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
20 Hb_000084_120 0.086242714 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]

Gene co-expression network

sample Hb_000613_080 Hb_000613_080 Hb_001617_060 Hb_001617_060 Hb_000613_080--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_000613_080--Hb_003966_030 Hb_174821_010 Hb_174821_010 Hb_000613_080--Hb_174821_010 Hb_003449_070 Hb_003449_070 Hb_000613_080--Hb_003449_070 Hb_003044_020 Hb_003044_020 Hb_000613_080--Hb_003044_020 Hb_000922_370 Hb_000922_370 Hb_000613_080--Hb_000922_370 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030 Hb_003966_030--Hb_003362_070 Hb_003966_030--Hb_004102_140 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130 Hb_174821_010--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_174821_010--Hb_002078_100 Hb_000648_100 Hb_000648_100 Hb_174821_010--Hb_000648_100 Hb_174821_010--Hb_001617_060 Hb_174821_010--Hb_003966_030 Hb_000832_220 Hb_000832_220 Hb_003449_070--Hb_000832_220 Hb_003449_070--Hb_001617_060 Hb_000088_130 Hb_000088_130 Hb_003449_070--Hb_000088_130 Hb_003449_070--Hb_000922_370 Hb_003449_070--Hb_174821_010 Hb_003044_020--Hb_000922_370 Hb_000183_020 Hb_000183_020 Hb_003044_020--Hb_000183_020 Hb_006252_020 Hb_006252_020 Hb_003044_020--Hb_006252_020 Hb_003044_020--Hb_003362_070 Hb_002329_040 Hb_002329_040 Hb_003044_020--Hb_002329_040 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_000922_370--Hb_002329_040 Hb_000922_370--Hb_003362_070 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.83421 6.94089 3.57428 5.98511 8.98295 12.9234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.94773 2.83672 6.18289 8.25727 4.09093

CAGE analysis