Hb_000613_090

Information

Type -
Description -
Location Contig613: 71209-77612
Sequence    

Annotation

kegg
ID cit:102609354
description uncharacterized LOC102609354
nr
ID XP_012081515.1
description PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1E6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18526 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51076: 71256-77563
cDNA
(Sanger)
(ID:Location)		 039_A01.ab1: 77431-77563

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_090 0.0 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
2 Hb_000853_420 0.0676331573 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_000038_170 0.0697315109 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
4 Hb_011671_430 0.0702929751 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
5 Hb_022250_030 0.0714563235 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000034_100 0.0722578526 - - dnajc14 protein, putative [Ricinus communis]
7 Hb_000487_110 0.0753166157 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
8 Hb_001595_030 0.0756642707 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
9 Hb_054865_100 0.0768537807 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
10 Hb_000645_050 0.0796599618 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
11 Hb_001635_170 0.0807342588 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
12 Hb_000031_060 0.0838269224 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
13 Hb_005276_210 0.0843105083 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
14 Hb_000853_170 0.0850743694 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
15 Hb_000661_250 0.0856042356 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
16 Hb_000059_330 0.0856970721 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
17 Hb_005245_130 0.0862621641 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
18 Hb_001259_090 0.0872064542 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
19 Hb_007919_060 0.087382436 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
20 Hb_001390_110 0.0877628499 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]

Gene co-expression network

sample Hb_000613_090 Hb_000613_090 Hb_000853_420 Hb_000853_420 Hb_000613_090--Hb_000853_420 Hb_000038_170 Hb_000038_170 Hb_000613_090--Hb_000038_170 Hb_011671_430 Hb_011671_430 Hb_000613_090--Hb_011671_430 Hb_022250_030 Hb_022250_030 Hb_000613_090--Hb_022250_030 Hb_000034_100 Hb_000034_100 Hb_000613_090--Hb_000034_100 Hb_000487_110 Hb_000487_110 Hb_000613_090--Hb_000487_110 Hb_000853_170 Hb_000853_170 Hb_000853_420--Hb_000853_170 Hb_002603_120 Hb_002603_120 Hb_000853_420--Hb_002603_120 Hb_004491_010 Hb_004491_010 Hb_000853_420--Hb_004491_010 Hb_000853_420--Hb_011671_430 Hb_001006_140 Hb_001006_140 Hb_000853_420--Hb_001006_140 Hb_002518_280 Hb_002518_280 Hb_000038_170--Hb_002518_280 Hb_000038_170--Hb_011671_430 Hb_001595_030 Hb_001595_030 Hb_000038_170--Hb_001595_030 Hb_003428_030 Hb_003428_030 Hb_000038_170--Hb_003428_030 Hb_000879_200 Hb_000879_200 Hb_000038_170--Hb_000879_200 Hb_000038_170--Hb_001006_140 Hb_004577_020 Hb_004577_020 Hb_011671_430--Hb_004577_020 Hb_014497_050 Hb_014497_050 Hb_011671_430--Hb_014497_050 Hb_003058_190 Hb_003058_190 Hb_011671_430--Hb_003058_190 Hb_004355_020 Hb_004355_020 Hb_011671_430--Hb_004355_020 Hb_003158_010 Hb_003158_010 Hb_011671_430--Hb_003158_010 Hb_002784_050 Hb_002784_050 Hb_022250_030--Hb_002784_050 Hb_001635_170 Hb_001635_170 Hb_022250_030--Hb_001635_170 Hb_007919_060 Hb_007919_060 Hb_022250_030--Hb_007919_060 Hb_000462_140 Hb_000462_140 Hb_022250_030--Hb_000462_140 Hb_000699_130 Hb_000699_130 Hb_022250_030--Hb_000699_130 Hb_005276_210 Hb_005276_210 Hb_000034_100--Hb_005276_210 Hb_000034_100--Hb_000487_110 Hb_005694_110 Hb_005694_110 Hb_000034_100--Hb_005694_110 Hb_000096_070 Hb_000096_070 Hb_000034_100--Hb_000096_070 Hb_054865_100 Hb_054865_100 Hb_000034_100--Hb_054865_100 Hb_005245_130 Hb_005245_130 Hb_000034_100--Hb_005245_130 Hb_008406_110 Hb_008406_110 Hb_000487_110--Hb_008406_110 Hb_000487_110--Hb_000038_170 Hb_000487_110--Hb_005276_210 Hb_000487_110--Hb_054865_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9531 24.5592 14.6208 12.8103 31.2202 24.6805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.856 24.9342 18.1259 11.4773 11.9635

CAGE analysis