Hb_000613_120

Information

Type transcription factor
Description TF Family: SET
Location Contig613: 87338-92535
Sequence    

Annotation

kegg
ID rcu:RCOM_0691150
description Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative (EC:2.1.1.127)
nr
ID XP_012081511.1
description PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
swissprot
ID Q43088
description Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1
trembl
ID A0A067KDM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18523 PE=4 SV=1
Gene Ontology
ID GO:0030785
description ribulose- bisphosphate carboxylase oxygenase large subunit n- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51082: 87434-92555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_120 0.0 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
2 Hb_010174_090 0.0680666074 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
3 Hb_000802_130 0.0801213665 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
4 Hb_001789_160 0.0818549707 - - PREDICTED: putative transporter arsB [Jatropha curcas]
5 Hb_006787_090 0.0835484337 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
6 Hb_004109_260 0.0848077988 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
7 Hb_031042_060 0.0889381258 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_005389_170 0.0902846408 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
9 Hb_021650_010 0.0911753287 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
10 Hb_000220_210 0.0915784833 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
11 Hb_000309_020 0.0923133231 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
12 Hb_001438_010 0.0930041429 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
13 Hb_000480_040 0.0943620609 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
14 Hb_001824_080 0.0947501805 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
15 Hb_003752_070 0.0954132333 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
16 Hb_000311_120 0.0956606382 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
17 Hb_005162_110 0.096449991 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
18 Hb_001623_130 0.0971816825 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_011861_050 0.0980408377 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
20 Hb_004884_180 0.0999553741 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000613_120 Hb_000613_120 Hb_010174_090 Hb_010174_090 Hb_000613_120--Hb_010174_090 Hb_000802_130 Hb_000802_130 Hb_000613_120--Hb_000802_130 Hb_001789_160 Hb_001789_160 Hb_000613_120--Hb_001789_160 Hb_006787_090 Hb_006787_090 Hb_000613_120--Hb_006787_090 Hb_004109_260 Hb_004109_260 Hb_000613_120--Hb_004109_260 Hb_031042_060 Hb_031042_060 Hb_000613_120--Hb_031042_060 Hb_000311_120 Hb_000311_120 Hb_010174_090--Hb_000311_120 Hb_010174_090--Hb_006787_090 Hb_003529_140 Hb_003529_140 Hb_010174_090--Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_010174_090--Hb_006569_040 Hb_000826_030 Hb_000826_030 Hb_010174_090--Hb_000826_030 Hb_021650_010 Hb_021650_010 Hb_000802_130--Hb_021650_010 Hb_001430_020 Hb_001430_020 Hb_000802_130--Hb_001430_020 Hb_000802_130--Hb_004109_260 Hb_011861_050 Hb_011861_050 Hb_000802_130--Hb_011861_050 Hb_102948_010 Hb_102948_010 Hb_000802_130--Hb_102948_010 Hb_003071_030 Hb_003071_030 Hb_001789_160--Hb_003071_030 Hb_000094_100 Hb_000094_100 Hb_001789_160--Hb_000094_100 Hb_001789_160--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_001789_160--Hb_000302_190 Hb_000260_710 Hb_000260_710 Hb_001789_160--Hb_000260_710 Hb_006787_090--Hb_000311_120 Hb_003752_070 Hb_003752_070 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_001824_080 Hb_001824_080 Hb_004109_260--Hb_001824_080 Hb_004339_040 Hb_004339_040 Hb_004109_260--Hb_004339_040 Hb_001438_010 Hb_001438_010 Hb_004109_260--Hb_001438_010 Hb_000880_070 Hb_000880_070 Hb_004109_260--Hb_000880_070 Hb_031042_060--Hb_000260_710 Hb_004884_180 Hb_004884_180 Hb_031042_060--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_031042_060--Hb_000363_060 Hb_031042_060--Hb_010174_090 Hb_031042_060--Hb_021650_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44026 4.50592 14.8371 5.21338 6.14279 4.14813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.23758 3.79606 4.21428 4.21584 15.3124

CAGE analysis