Hb_000613_160

Information

Type -
Description -
Location Contig613: 120875-122438
Sequence    

Annotation

kegg
ID rcu:RCOM_0691120
description coated vesicle membrane protein, putative
nr
ID XP_002532207.1
description coated vesicle membrane protein, putative [Ricinus communis]
swissprot
ID Q9S7M9
description Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana GN=At3g07680 PE=1 SV=1
trembl
ID B9T1T8
description Coated vesicle membrane protein, putative OS=Ricinus communis GN=RCOM_0691120 PE=3 SV=1
Gene Ontology
ID GO:0005789
description transmembrane emp24 domain-containing protein p24beta2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51084: 121199-122433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_160 0.0 - - coated vesicle membrane protein, putative [Ricinus communis]
2 Hb_000788_080 0.1206280657 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
3 Hb_005000_160 0.12326921 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
4 Hb_001507_070 0.135367675 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002704_050 0.142954923 - - cysteine-type peptidase, putative [Ricinus communis]
6 Hb_001276_060 0.1430549152 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
7 Hb_000979_250 0.1517201876 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009838_040 0.1538769609 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
9 Hb_001511_140 0.1543814111 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
10 Hb_003211_050 0.154841267 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
11 Hb_000592_060 0.1551780448 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
12 Hb_001373_100 0.1567361606 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004218_210 0.1573349813 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
14 Hb_000453_300 0.1587178179 - - latex cystatin [Hevea brasiliensis]
15 Hb_001579_140 0.1590789174 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
16 Hb_000318_490 0.1602182885 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
17 Hb_001785_040 0.1611126674 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
18 Hb_089100_030 0.1624235721 - - -
19 Hb_004545_130 0.1626198998 - - uncharacterized protein LOC100305465 [Glycine max]
20 Hb_003371_100 0.1627331458 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000613_160 Hb_000613_160 Hb_000788_080 Hb_000788_080 Hb_000613_160--Hb_000788_080 Hb_005000_160 Hb_005000_160 Hb_000613_160--Hb_005000_160 Hb_001507_070 Hb_001507_070 Hb_000613_160--Hb_001507_070 Hb_002704_050 Hb_002704_050 Hb_000613_160--Hb_002704_050 Hb_001276_060 Hb_001276_060 Hb_000613_160--Hb_001276_060 Hb_000979_250 Hb_000979_250 Hb_000613_160--Hb_000979_250 Hb_003095_070 Hb_003095_070 Hb_000788_080--Hb_003095_070 Hb_000788_080--Hb_005000_160 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_009838_040 Hb_009838_040 Hb_000788_080--Hb_009838_040 Hb_003371_100 Hb_003371_100 Hb_005000_160--Hb_003371_100 Hb_005000_160--Hb_001276_060 Hb_005000_160--Hb_009838_040 Hb_011671_400 Hb_011671_400 Hb_005000_160--Hb_011671_400 Hb_000742_270 Hb_000742_270 Hb_001507_070--Hb_000742_270 Hb_011004_010 Hb_011004_010 Hb_001507_070--Hb_011004_010 Hb_001507_070--Hb_003371_100 Hb_148121_010 Hb_148121_010 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_000032_040 Hb_000032_040 Hb_001507_070--Hb_000032_040 Hb_000592_060 Hb_000592_060 Hb_002704_050--Hb_000592_060 Hb_012022_100 Hb_012022_100 Hb_002704_050--Hb_012022_100 Hb_002704_050--Hb_000788_080 Hb_089100_030 Hb_089100_030 Hb_002704_050--Hb_089100_030 Hb_002043_120 Hb_002043_120 Hb_002704_050--Hb_002043_120 Hb_001276_060--Hb_003095_070 Hb_001276_060--Hb_011671_400 Hb_003211_050 Hb_003211_050 Hb_001276_060--Hb_003211_050 Hb_001276_060--Hb_000788_080 Hb_001276_060--Hb_009838_040 Hb_008066_030 Hb_008066_030 Hb_000979_250--Hb_008066_030 Hb_000979_250--Hb_001511_140 Hb_001776_170 Hb_001776_170 Hb_000979_250--Hb_001776_170 Hb_003198_010 Hb_003198_010 Hb_000979_250--Hb_003198_010 Hb_001488_370 Hb_001488_370 Hb_000979_250--Hb_001488_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47788 0.502063 1.13197 1.52511 0.0944681 1.05608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1098 20.0466 13.1222 1.59477 0.645725

CAGE analysis