Hb_000613_170

Information

Type -
Description -
Location Contig613: 121895-127893
Sequence    

Annotation

kegg
ID rcu:RCOM_0691110
description NOI, putative
nr
ID XP_012081506.1
description PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
swissprot
ID Q8GYN5
description RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1
trembl
ID B9T1T7
description NOI, putative OS=Ricinus communis GN=RCOM_0691110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51085: 122719-127929 , PASA_asmbl_51086: 124058-127929
cDNA
(Sanger)
(ID:Location)		 035_D21.ab1: 122738-127688 , 041_B07.ab1: 122739-127688

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_170 0.0 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
2 Hb_002248_100 0.1273671026 - - hypothetical protein VITISV_027197 [Vitis vinifera]
3 Hb_000635_080 0.1338579818 - - 60S ribosomal protein L17A [Hevea brasiliensis]
4 Hb_003549_020 0.1354239715 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000819_070 0.1361381975 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
6 Hb_007943_140 0.1368954141 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
7 Hb_010827_020 0.1372144817 - - 60S ribosomal protein L17B [Hevea brasiliensis]
8 Hb_000085_330 0.1404932592 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
9 Hb_097007_010 0.1411777246 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
10 Hb_000617_110 0.1413907848 - - translationally controlled tumor protein [Hevea brasiliensis]
11 Hb_030565_040 0.1423645951 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
12 Hb_000236_460 0.1429251624 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
13 Hb_168711_010 0.1431520086 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]
14 Hb_003349_070 0.1460641658 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
15 Hb_000661_240 0.1465289805 - - hypothetical protein POPTR_0009s05540g [Populus trichocarpa]
16 Hb_000172_420 0.1492365599 - - 60S ribosomal protein L30, putative [Ricinus communis]
17 Hb_060618_010 0.1492820049 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_183612_080 0.1504113775 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
19 Hb_004735_050 0.1518418906 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
20 Hb_001623_430 0.1550753398 - - PREDICTED: small acidic protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000613_170 Hb_000613_170 Hb_002248_100 Hb_002248_100 Hb_000613_170--Hb_002248_100 Hb_000635_080 Hb_000635_080 Hb_000613_170--Hb_000635_080 Hb_003549_020 Hb_003549_020 Hb_000613_170--Hb_003549_020 Hb_000819_070 Hb_000819_070 Hb_000613_170--Hb_000819_070 Hb_007943_140 Hb_007943_140 Hb_000613_170--Hb_007943_140 Hb_010827_020 Hb_010827_020 Hb_000613_170--Hb_010827_020 Hb_000172_420 Hb_000172_420 Hb_002248_100--Hb_000172_420 Hb_002248_100--Hb_000635_080 Hb_002248_100--Hb_007943_140 Hb_006588_080 Hb_006588_080 Hb_002248_100--Hb_006588_080 Hb_002248_100--Hb_010827_020 Hb_172221_010 Hb_172221_010 Hb_002248_100--Hb_172221_010 Hb_001377_380 Hb_001377_380 Hb_000635_080--Hb_001377_380 Hb_000780_210 Hb_000780_210 Hb_000635_080--Hb_000780_210 Hb_000635_080--Hb_006588_080 Hb_004545_130 Hb_004545_130 Hb_000635_080--Hb_004545_130 Hb_002316_120 Hb_002316_120 Hb_000635_080--Hb_002316_120 Hb_000236_460 Hb_000236_460 Hb_003549_020--Hb_000236_460 Hb_000645_190 Hb_000645_190 Hb_003549_020--Hb_000645_190 Hb_097007_010 Hb_097007_010 Hb_003549_020--Hb_097007_010 Hb_002320_060 Hb_002320_060 Hb_003549_020--Hb_002320_060 Hb_004007_180 Hb_004007_180 Hb_003549_020--Hb_004007_180 Hb_007497_030 Hb_007497_030 Hb_003549_020--Hb_007497_030 Hb_004223_260 Hb_004223_260 Hb_000819_070--Hb_004223_260 Hb_000617_110 Hb_000617_110 Hb_000819_070--Hb_000617_110 Hb_001369_400 Hb_001369_400 Hb_000819_070--Hb_001369_400 Hb_003349_070 Hb_003349_070 Hb_000819_070--Hb_003349_070 Hb_000819_070--Hb_000780_210 Hb_000819_070--Hb_000635_080 Hb_000963_030 Hb_000963_030 Hb_007943_140--Hb_000963_030 Hb_001017_070 Hb_001017_070 Hb_007943_140--Hb_001017_070 Hb_007943_140--Hb_000172_420 Hb_007943_140--Hb_097007_010 Hb_026398_010 Hb_026398_010 Hb_007943_140--Hb_026398_010 Hb_001832_120 Hb_001832_120 Hb_010827_020--Hb_001832_120 Hb_010827_020--Hb_000635_080 Hb_010827_020--Hb_000780_210 Hb_001700_020 Hb_001700_020 Hb_010827_020--Hb_001700_020 Hb_183086_040 Hb_183086_040 Hb_010827_020--Hb_183086_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0723 13.4 5.88904 19.1625 28.8043 51.7302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
142.317 283.788 44.8103 49.9768 3.35234

CAGE analysis