Hb_000613_200

Information

Type rubber biosynthesis
Description Gene Name: Acetyl-CoA acetyltransferase
Location Contig613: 143173-149285
Sequence    

Annotation

kegg
ID egr:104456583
description acetyl-CoA acetyltransferase, cytosolic 1-like
nr
ID BAF98277.1
description acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
swissprot
ID Q8S4Y1
description Acetyl-CoA acetyltransferase, cytosolic 1 OS=Arabidopsis thaliana GN=AAT1 PE=2 SV=1
trembl
ID A9ZMZ5
description Acetyl-CoA C-acetyltransferase OS=Hevea brasiliensis GN=HbAACT PE=2 SV=1
Gene Ontology
ID GO:0005777
description acetyl- cytosolic 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51088: 143217-149927
cDNA
(Sanger)
(ID:Location)		 006_H10.ab1: 146476-149927 , 041_D03.ab1: 146712-149927 , 043_D21.ab1: 146412-149927

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_200 0.0 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
2 Hb_019516_040 0.1386845441 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
3 Hb_017434_090 0.1545422238 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000753_260 0.1575158107 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
5 Hb_006735_040 0.1626752013 - - unnamed protein product [Vitis vinifera]
6 Hb_001386_130 0.1644687115 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
7 Hb_004607_140 0.1669979923 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
8 Hb_116701_020 0.1693297704 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000699_110 0.1696098584 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
10 Hb_004032_440 0.17093525 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
11 Hb_002660_140 0.1733521626 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
12 Hb_002518_250 0.1734049741 - - conserved hypothetical protein 10 [Hevea brasiliensis]
13 Hb_005271_170 0.1750764019 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
14 Hb_000184_040 0.1756242078 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
15 Hb_000510_100 0.1760668902 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_003050_040 0.177775323 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
17 Hb_006452_190 0.1785517505 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
18 Hb_011537_040 0.1794048655 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
19 Hb_002924_050 0.1797323084 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
20 Hb_000762_020 0.1809812008 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]

Gene co-expression network

sample Hb_000613_200 Hb_000613_200 Hb_019516_040 Hb_019516_040 Hb_000613_200--Hb_019516_040 Hb_017434_090 Hb_017434_090 Hb_000613_200--Hb_017434_090 Hb_000753_260 Hb_000753_260 Hb_000613_200--Hb_000753_260 Hb_006735_040 Hb_006735_040 Hb_000613_200--Hb_006735_040 Hb_001386_130 Hb_001386_130 Hb_000613_200--Hb_001386_130 Hb_004607_140 Hb_004607_140 Hb_000613_200--Hb_004607_140 Hb_000997_260 Hb_000997_260 Hb_019516_040--Hb_000997_260 Hb_000510_100 Hb_000510_100 Hb_019516_040--Hb_000510_100 Hb_000762_020 Hb_000762_020 Hb_019516_040--Hb_000762_020 Hb_003745_010 Hb_003745_010 Hb_019516_040--Hb_003745_010 Hb_001140_160 Hb_001140_160 Hb_019516_040--Hb_001140_160 Hb_000920_140 Hb_000920_140 Hb_019516_040--Hb_000920_140 Hb_000282_060 Hb_000282_060 Hb_017434_090--Hb_000282_060 Hb_002660_140 Hb_002660_140 Hb_017434_090--Hb_002660_140 Hb_003428_110 Hb_003428_110 Hb_017434_090--Hb_003428_110 Hb_000732_260 Hb_000732_260 Hb_017434_090--Hb_000732_260 Hb_005754_020 Hb_005754_020 Hb_017434_090--Hb_005754_020 Hb_004032_440 Hb_004032_440 Hb_017434_090--Hb_004032_440 Hb_000784_130 Hb_000784_130 Hb_000753_260--Hb_000784_130 Hb_002890_220 Hb_002890_220 Hb_000753_260--Hb_002890_220 Hb_002298_040 Hb_002298_040 Hb_000753_260--Hb_002298_040 Hb_005298_030 Hb_005298_030 Hb_000753_260--Hb_005298_030 Hb_002374_340 Hb_002374_340 Hb_000753_260--Hb_002374_340 Hb_029879_080 Hb_029879_080 Hb_000753_260--Hb_029879_080 Hb_003018_180 Hb_003018_180 Hb_006735_040--Hb_003018_180 Hb_006735_040--Hb_000753_260 Hb_001780_060 Hb_001780_060 Hb_006735_040--Hb_001780_060 Hb_000376_110 Hb_000376_110 Hb_006735_040--Hb_000376_110 Hb_009662_030 Hb_009662_030 Hb_006735_040--Hb_009662_030 Hb_006735_040--Hb_005298_030 Hb_000680_150 Hb_000680_150 Hb_001386_130--Hb_000680_150 Hb_000590_090 Hb_000590_090 Hb_001386_130--Hb_000590_090 Hb_004813_010 Hb_004813_010 Hb_001386_130--Hb_004813_010 Hb_001514_020 Hb_001514_020 Hb_001386_130--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_001386_130--Hb_001493_100 Hb_116701_020 Hb_116701_020 Hb_001386_130--Hb_116701_020 Hb_000272_100 Hb_000272_100 Hb_004607_140--Hb_000272_100 Hb_157854_010 Hb_157854_010 Hb_004607_140--Hb_157854_010 Hb_004204_030 Hb_004204_030 Hb_004607_140--Hb_004204_030 Hb_000163_200 Hb_000163_200 Hb_004607_140--Hb_000163_200 Hb_006824_020 Hb_006824_020 Hb_004607_140--Hb_006824_020 Hb_004607_140--Hb_000732_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1069.72 141.886 26.5132 108.942 824.361 527.494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1714.81 336.39 265.537 103.631 40.9073

CAGE analysis