Hb_000613_260

Information

Type -
Description -
Location Contig613: 212165-217211
Sequence    

Annotation

kegg
ID tcc:TCM_044860
description hypothetical protein
nr
ID CAN79440.1
description hypothetical protein VITISV_043487 [Vitis vinifera]
swissprot
ID P04146
description Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
trembl
ID A5BY76
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043487 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein VITISV_043487

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_260 0.0 - - hypothetical protein VITISV_043487 [Vitis vinifera]
2 Hb_000157_110 0.2145362141 - - hypothetical protein Csa_6G439410 [Cucumis sativus]
3 Hb_024714_040 0.2716584324 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
4 Hb_001390_020 0.2990854509 - - malate dehydrogenase, putative [Ricinus communis]
5 Hb_000300_310 0.3038134944 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
6 Hb_002400_150 0.3040849354 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
7 Hb_012707_020 0.3186249263 - - -
8 Hb_000230_030 0.3208088103 - - hypothetical protein B456_013G2021001, partial [Gossypium raimondii]
9 Hb_001496_140 0.3225298493 - - -
10 Hb_006538_180 0.3314401653 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
11 Hb_000832_340 0.3330516651 - - PREDICTED: psbP-like protein 2, chloroplastic isoform X3 [Nelumbo nucifera]
12 Hb_133191_010 0.3342950592 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
13 Hb_002090_010 0.3344817543 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
14 Hb_002411_020 0.3346243418 - - hypothetical protein JCGZ_24577 [Jatropha curcas]
15 Hb_003124_020 0.3348742265 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
16 Hb_002529_070 0.3372836151 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
17 Hb_000014_190 0.3376935218 - - Phytoene dehydrogenase, putative [Ricinus communis]
18 Hb_000062_520 0.3406445427 - - conserved hypothetical protein [Ricinus communis]
19 Hb_023020_070 0.3429569271 - - conserved hypothetical protein [Ricinus communis]
20 Hb_021428_010 0.3430628387 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]

Gene co-expression network

sample Hb_000613_260 Hb_000613_260 Hb_000157_110 Hb_000157_110 Hb_000613_260--Hb_000157_110 Hb_024714_040 Hb_024714_040 Hb_000613_260--Hb_024714_040 Hb_001390_020 Hb_001390_020 Hb_000613_260--Hb_001390_020 Hb_000300_310 Hb_000300_310 Hb_000613_260--Hb_000300_310 Hb_002400_150 Hb_002400_150 Hb_000613_260--Hb_002400_150 Hb_012707_020 Hb_012707_020 Hb_000613_260--Hb_012707_020 Hb_158144_020 Hb_158144_020 Hb_000157_110--Hb_158144_020 Hb_000157_110--Hb_000300_310 Hb_000157_110--Hb_001390_020 Hb_000890_110 Hb_000890_110 Hb_000157_110--Hb_000890_110 Hb_000014_190 Hb_000014_190 Hb_000157_110--Hb_000014_190 Hb_006538_180 Hb_006538_180 Hb_024714_040--Hb_006538_180 Hb_006916_180 Hb_006916_180 Hb_024714_040--Hb_006916_180 Hb_024714_040--Hb_001390_020 Hb_138229_010 Hb_138229_010 Hb_024714_040--Hb_138229_010 Hb_000987_160 Hb_000987_160 Hb_024714_040--Hb_000987_160 Hb_031139_010 Hb_031139_010 Hb_001390_020--Hb_031139_010 Hb_000754_050 Hb_000754_050 Hb_001390_020--Hb_000754_050 Hb_014361_110 Hb_014361_110 Hb_001390_020--Hb_014361_110 Hb_002232_380 Hb_002232_380 Hb_001390_020--Hb_002232_380 Hb_003494_030 Hb_003494_030 Hb_001390_020--Hb_003494_030 Hb_003106_170 Hb_003106_170 Hb_001390_020--Hb_003106_170 Hb_000300_310--Hb_000014_190 Hb_000963_090 Hb_000963_090 Hb_000300_310--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_000300_310--Hb_078477_060 Hb_002226_050 Hb_002226_050 Hb_000300_310--Hb_002226_050 Hb_001811_080 Hb_001811_080 Hb_000300_310--Hb_001811_080 Hb_004339_030 Hb_004339_030 Hb_002400_150--Hb_004339_030 Hb_003581_290 Hb_003581_290 Hb_002400_150--Hb_003581_290 Hb_000256_110 Hb_000256_110 Hb_002400_150--Hb_000256_110 Hb_003057_010 Hb_003057_010 Hb_002400_150--Hb_003057_010 Hb_029879_060 Hb_029879_060 Hb_002400_150--Hb_029879_060 Hb_000008_350 Hb_000008_350 Hb_002400_150--Hb_000008_350 Hb_000261_300 Hb_000261_300 Hb_012707_020--Hb_000261_300 Hb_006615_210 Hb_006615_210 Hb_012707_020--Hb_006615_210 Hb_093543_010 Hb_093543_010 Hb_012707_020--Hb_093543_010 Hb_006717_080 Hb_006717_080 Hb_012707_020--Hb_006717_080 Hb_040473_010 Hb_040473_010 Hb_012707_020--Hb_040473_010 Hb_012717_030 Hb_012717_030 Hb_012707_020--Hb_012717_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0237216 0 0 0.0142679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.017249 0.0135731 0 0.0431124 0.0865964

CAGE analysis