Hb_000614_200

Information

Type -
Description -
Location Contig614: 125779-127389
Sequence    

Annotation

kegg
ID rcu:RCOM_1081200
description plant mitotic spindle assembly checkpoint protein mad2, putative
nr
ID XP_002514967.1
description plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
swissprot
ID Q9LU93
description Mitotic spindle checkpoint protein MAD2 OS=Arabidopsis thaliana GN=MAD2 PE=1 SV=1
trembl
ID B9RMJ8
description Plant mitotic spindle assembly checkpoint protein mad2, putative OS=Ricinus communis GN=RCOM_1081200 PE=4 SV=1
Gene Ontology
ID GO:0005635
description mitotic spindle checkpoint protein mad2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51142: 125749-127338
cDNA
(Sanger)
(ID:Location)		 034_G14r.ab1: 127271-128080

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000614_200 0.0 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
2 Hb_003776_050 0.0461023646 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
3 Hb_011849_010 0.0475162861 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
4 Hb_007245_030 0.0583973823 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002374_090 0.0589944265 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
6 Hb_119044_040 0.0654814974 - - cyclin B, putative [Ricinus communis]
7 Hb_003398_050 0.0659284351 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
8 Hb_000316_070 0.0666719618 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
9 Hb_004032_390 0.0676416992 - - CDK, putative [Ricinus communis]
10 Hb_002928_150 0.0679459229 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
11 Hb_001699_070 0.072624302 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001220_020 0.0737860343 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
13 Hb_001279_110 0.0748666437 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
14 Hb_000060_030 0.0749307614 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
15 Hb_005914_100 0.0769931612 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001168_030 0.0784177345 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
17 Hb_001998_180 0.0794671316 - - actin binding protein, putative [Ricinus communis]
18 Hb_000038_070 0.0799401676 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001969_120 0.0799809218 - - PREDICTED: plectin [Jatropha curcas]
20 Hb_080952_060 0.0823522279 - - PREDICTED: patellin-4 [Populus euphratica]

Gene co-expression network

sample Hb_000614_200 Hb_000614_200 Hb_003776_050 Hb_003776_050 Hb_000614_200--Hb_003776_050 Hb_011849_010 Hb_011849_010 Hb_000614_200--Hb_011849_010 Hb_007245_030 Hb_007245_030 Hb_000614_200--Hb_007245_030 Hb_002374_090 Hb_002374_090 Hb_000614_200--Hb_002374_090 Hb_119044_040 Hb_119044_040 Hb_000614_200--Hb_119044_040 Hb_003398_050 Hb_003398_050 Hb_000614_200--Hb_003398_050 Hb_001969_120 Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_003776_050--Hb_119044_040 Hb_003776_050--Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_011849_010--Hb_003776_050 Hb_011849_010--Hb_002374_090 Hb_000038_070 Hb_000038_070 Hb_011849_010--Hb_000038_070 Hb_011849_010--Hb_119044_040 Hb_000316_070 Hb_000316_070 Hb_011849_010--Hb_000316_070 Hb_005914_100 Hb_005914_100 Hb_007245_030--Hb_005914_100 Hb_001168_030 Hb_001168_030 Hb_007245_030--Hb_001168_030 Hb_007245_030--Hb_000316_070 Hb_007245_030--Hb_002928_150 Hb_004225_160 Hb_004225_160 Hb_007245_030--Hb_004225_160 Hb_002374_090--Hb_119044_040 Hb_002374_090--Hb_003776_050 Hb_002374_090--Hb_000038_070 Hb_002374_090--Hb_000316_070 Hb_001279_110 Hb_001279_110 Hb_119044_040--Hb_001279_110 Hb_000085_360 Hb_000085_360 Hb_119044_040--Hb_000085_360 Hb_004631_040 Hb_004631_040 Hb_119044_040--Hb_004631_040 Hb_119044_040--Hb_001969_120 Hb_003398_050--Hb_002928_150 Hb_001220_020 Hb_001220_020 Hb_003398_050--Hb_001220_020 Hb_004032_390 Hb_004032_390 Hb_003398_050--Hb_004032_390 Hb_004174_030 Hb_004174_030 Hb_003398_050--Hb_004174_030 Hb_003398_050--Hb_005914_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0215956 0.937125 34.1404 12.9456 0 0.0807582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0388887 0.0716721 2.01647 1.5137

CAGE analysis