Hb_000614_210

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig614: 127460-136365
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06510g
description POPTRDRAFT_833447; DNA-binding protein GT-1
nr
ID XP_012085608.1
description PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FX53
description Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1
trembl
ID A0A067JSB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17910 PE=4 SV=1
Gene Ontology
ID GO:0005634
description trihelix transcription factor gt-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51141: 127271-136160 , PASA_asmbl_51143: 128870-135639 , PASA_asmbl_51145: 130377-130850
cDNA
(Sanger)
(ID:Location)		 034_G14.ab1: 127695-135686

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000614_210 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
2 Hb_159558_010 0.0470527786 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
3 Hb_002205_250 0.0473248891 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
4 Hb_003835_070 0.0486594363 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
5 Hb_001814_030 0.050051169 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
6 Hb_162275_050 0.0562964752 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
7 Hb_105105_010 0.059151558 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
8 Hb_001089_050 0.0596849956 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
9 Hb_001195_530 0.0613852722 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011849_040 0.0614238086 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_001550_060 0.061872269 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
12 Hb_002026_210 0.0621690021 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
13 Hb_020831_030 0.0622681013 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000289_040 0.0625197725 - - Poly(A) polymerase alpha, putative [Ricinus communis]
15 Hb_000402_230 0.0628736575 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
16 Hb_003206_130 0.0632157443 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
17 Hb_005542_140 0.0637006551 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
18 Hb_000009_500 0.0641680071 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
19 Hb_000340_530 0.0642502173 - - hypothetical protein VITISV_016664 [Vitis vinifera]
20 Hb_000011_100 0.0649732812 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]

Gene co-expression network

sample Hb_000614_210 Hb_000614_210 Hb_159558_010 Hb_159558_010 Hb_000614_210--Hb_159558_010 Hb_002205_250 Hb_002205_250 Hb_000614_210--Hb_002205_250 Hb_003835_070 Hb_003835_070 Hb_000614_210--Hb_003835_070 Hb_001814_030 Hb_001814_030 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_105105_010 Hb_105105_010 Hb_000614_210--Hb_105105_010 Hb_005542_140 Hb_005542_140 Hb_159558_010--Hb_005542_140 Hb_159558_010--Hb_001814_030 Hb_000174_060 Hb_000174_060 Hb_159558_010--Hb_000174_060 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_009615_170 Hb_009615_170 Hb_159558_010--Hb_009615_170 Hb_002205_250--Hb_105105_010 Hb_002205_250--Hb_003835_070 Hb_002205_250--Hb_001814_030 Hb_001716_020 Hb_001716_020 Hb_002205_250--Hb_001716_020 Hb_000243_210 Hb_000243_210 Hb_002205_250--Hb_000243_210 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_003835_070--Hb_105105_010 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_012779_090 Hb_012779_090 Hb_162275_050--Hb_012779_090 Hb_162275_050--Hb_012194_030 Hb_001410_020 Hb_001410_020 Hb_162275_050--Hb_001410_020 Hb_162275_050--Hb_003835_070 Hb_003464_090 Hb_003464_090 Hb_162275_050--Hb_003464_090 Hb_001408_140 Hb_001408_140 Hb_105105_010--Hb_001408_140 Hb_001195_530 Hb_001195_530 Hb_105105_010--Hb_001195_530 Hb_105105_010--Hb_001716_020 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3158 26.6488 15.327 16.942 19.5504 19.3836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7316 15.4339 15.4384 20.4264 17.3304

CAGE analysis