Hb_000614_230

Information

Type -
Description -
Location Contig614: 140706-145043
Sequence    

Annotation

kegg
ID rcu:RCOM_1081340
description hypothetical protein
nr
ID XP_012085605.1
description PREDICTED: F-box protein SKIP14 [Jatropha curcas]
swissprot
ID Q9LU91
description F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1
trembl
ID A0A067K4P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17907 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51147: 140737-141475 , PASA_asmbl_51148: 141481-145040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000614_230 0.0 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
2 Hb_008695_210 0.0546377682 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
3 Hb_000567_260 0.0579432764 - - BnaA09g41440D [Brassica napus]
4 Hb_001329_300 0.0596162875 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
5 Hb_002006_090 0.0614855588 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
6 Hb_003266_130 0.0654699577 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
7 Hb_001085_170 0.0742618209 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
8 Hb_178968_110 0.0753665727 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
9 Hb_000457_150 0.0800506189 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
10 Hb_006915_050 0.0819325705 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
11 Hb_006816_140 0.0820594566 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
12 Hb_004109_190 0.0823036208 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
13 Hb_000110_160 0.0828156654 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001277_330 0.0829799363 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
15 Hb_011918_080 0.0847433925 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
16 Hb_000059_220 0.0849035532 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
17 Hb_055062_030 0.0856264293 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
18 Hb_000997_400 0.0859272991 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
19 Hb_000754_040 0.0869236888 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
20 Hb_002686_290 0.0872411515 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_000614_230 Hb_000614_230 Hb_008695_210 Hb_008695_210 Hb_000614_230--Hb_008695_210 Hb_000567_260 Hb_000567_260 Hb_000614_230--Hb_000567_260 Hb_001329_300 Hb_001329_300 Hb_000614_230--Hb_001329_300 Hb_002006_090 Hb_002006_090 Hb_000614_230--Hb_002006_090 Hb_003266_130 Hb_003266_130 Hb_000614_230--Hb_003266_130 Hb_001085_170 Hb_001085_170 Hb_000614_230--Hb_001085_170 Hb_006915_050 Hb_006915_050 Hb_008695_210--Hb_006915_050 Hb_000907_080 Hb_000907_080 Hb_008695_210--Hb_000907_080 Hb_189003_080 Hb_189003_080 Hb_008695_210--Hb_189003_080 Hb_000754_040 Hb_000754_040 Hb_008695_210--Hb_000754_040 Hb_008695_210--Hb_002006_090 Hb_001671_020 Hb_001671_020 Hb_000567_260--Hb_001671_020 Hb_000567_260--Hb_001329_300 Hb_000567_260--Hb_189003_080 Hb_001248_130 Hb_001248_130 Hb_000567_260--Hb_001248_130 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030 Hb_000110_160 Hb_000110_160 Hb_001329_300--Hb_000110_160 Hb_001329_300--Hb_002006_090 Hb_008066_010 Hb_008066_010 Hb_001329_300--Hb_008066_010 Hb_001329_300--Hb_008695_210 Hb_000001_140 Hb_000001_140 Hb_002006_090--Hb_000001_140 Hb_002006_090--Hb_001085_170 Hb_002006_090--Hb_006915_050 Hb_178968_110 Hb_178968_110 Hb_003266_130--Hb_178968_110 Hb_006816_140 Hb_006816_140 Hb_003266_130--Hb_006816_140 Hb_005488_010 Hb_005488_010 Hb_003266_130--Hb_005488_010 Hb_001158_140 Hb_001158_140 Hb_003266_130--Hb_001158_140 Hb_010172_050 Hb_010172_050 Hb_003266_130--Hb_010172_050 Hb_006922_030 Hb_006922_030 Hb_001085_170--Hb_006922_030 Hb_007558_140 Hb_007558_140 Hb_001085_170--Hb_007558_140 Hb_011918_080 Hb_011918_080 Hb_001085_170--Hb_011918_080 Hb_000179_210 Hb_000179_210 Hb_001085_170--Hb_000179_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.0284 17.8604 6.41055 15.4224 29.4302 41.445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.9944 38.3168 66.3937 14.082 16.9863

CAGE analysis