Hb_000614_250

Information

Type -
Description -
Location Contig614: 152999-171982
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06440g
description POPTRDRAFT_1089741; serine/threonine protein phosphatase 2A regulatory subunit B'
nr
ID XP_012085598.1
description PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
swissprot
ID Q9LU89
description Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1
trembl
ID A0A067K3D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17903 PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 57 kda regulatory subunit b theta isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51153: 152856-153534 , PASA_asmbl_51155: 154428-157192 , PASA_asmbl_51157: 160669-161789 , PASA_asmbl_51158: 160669-161789 , PASA_asmbl_51159: 162643-171596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000614_250 0.0 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
2 Hb_000840_250 0.0569661421 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
3 Hb_001633_210 0.0573324147 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
4 Hb_001014_030 0.0657418353 - - ATP binding protein, putative [Ricinus communis]
5 Hb_002450_020 0.0701948453 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
6 Hb_000710_060 0.0709776288 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
7 Hb_003847_030 0.071084377 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
8 Hb_089032_030 0.0714912863 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
9 Hb_002620_020 0.071669869 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
10 Hb_010812_120 0.0718247941 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
11 Hb_000856_010 0.0764210414 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
12 Hb_000049_210 0.0764316981 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
13 Hb_094836_010 0.0786695228 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
14 Hb_003349_090 0.0794947563 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
15 Hb_004837_160 0.07990643 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
16 Hb_000890_150 0.0800623307 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
17 Hb_000297_010 0.0806907902 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
18 Hb_000329_340 0.0810856551 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004453_050 0.0821003904 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
20 Hb_000603_080 0.083274611 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]

Gene co-expression network

sample Hb_000614_250 Hb_000614_250 Hb_000840_250 Hb_000840_250 Hb_000614_250--Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_000614_250--Hb_001633_210 Hb_001014_030 Hb_001014_030 Hb_000614_250--Hb_001014_030 Hb_002450_020 Hb_002450_020 Hb_000614_250--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_000614_250--Hb_000710_060 Hb_003847_030 Hb_003847_030 Hb_000614_250--Hb_003847_030 Hb_000840_250--Hb_001633_210 Hb_000297_010 Hb_000297_010 Hb_000840_250--Hb_000297_010 Hb_000840_250--Hb_001014_030 Hb_000185_030 Hb_000185_030 Hb_000840_250--Hb_000185_030 Hb_000230_390 Hb_000230_390 Hb_000840_250--Hb_000230_390 Hb_000250_060 Hb_000250_060 Hb_001633_210--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001633_210--Hb_010812_120 Hb_001633_210--Hb_000185_030 Hb_001633_210--Hb_000297_010 Hb_000003_250 Hb_000003_250 Hb_001014_030--Hb_000003_250 Hb_001014_030--Hb_001633_210 Hb_001014_030--Hb_000297_010 Hb_001014_030--Hb_002450_020 Hb_000041_100 Hb_000041_100 Hb_002450_020--Hb_000041_100 Hb_011386_010 Hb_011386_010 Hb_002450_020--Hb_011386_010 Hb_002450_020--Hb_000297_010 Hb_005054_110 Hb_005054_110 Hb_002450_020--Hb_005054_110 Hb_015934_040 Hb_015934_040 Hb_002450_020--Hb_015934_040 Hb_000710_060--Hb_000185_030 Hb_000049_210 Hb_000049_210 Hb_000710_060--Hb_000049_210 Hb_008770_030 Hb_008770_030 Hb_000710_060--Hb_008770_030 Hb_000710_060--Hb_001633_210 Hb_000710_060--Hb_000297_010 Hb_001205_240 Hb_001205_240 Hb_000710_060--Hb_001205_240 Hb_000327_180 Hb_000327_180 Hb_003847_030--Hb_000327_180 Hb_003847_030--Hb_000049_210 Hb_003847_030--Hb_005054_110 Hb_000497_300 Hb_000497_300 Hb_003847_030--Hb_000497_300 Hb_003847_030--Hb_001014_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.20258 10.4911 5.28518 10.8207 5.18315 9.28031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2596 14.4826 14.91 9.81425 7.68499

CAGE analysis