Hb_000615_050

Information

Type -
Description -
Location Contig615: 136218-144914
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00580g
description Potassium transporter 11 family protein
nr
ID XP_006368214.1
description Potassium transporter 11 family protein [Populus trichocarpa]
swissprot
ID Q8VXB1
description Putative potassium transporter 12 OS=Oryza sativa subsp. japonica GN=HAK12 PE=2 SV=1
trembl
ID B9N3S8
description Potassium transporter OS=Populus trichocarpa GN=POPTR_0001s00580g PE=3 SV=1
Gene Ontology
ID GO:0016020
description potassium transporter 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51170: 136277-142275 , PASA_asmbl_51171: 142343-144699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000615_050 0.0 - - Potassium transporter 11 family protein [Populus trichocarpa]
2 Hb_001662_130 0.0962009594 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
3 Hb_001766_050 0.1039461914 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
4 Hb_000649_140 0.1043953288 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
5 Hb_158530_020 0.1045120304 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
6 Hb_004951_060 0.1065117859 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
7 Hb_001541_120 0.1074162054 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
8 Hb_002677_020 0.1075433109 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
9 Hb_062226_060 0.1080346969 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
10 Hb_000590_120 0.1088651888 - - dehydroascorbate reductase, putative [Ricinus communis]
11 Hb_003360_040 0.1098738962 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
12 Hb_000110_140 0.1102398211 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
13 Hb_000465_070 0.1107761657 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
14 Hb_000403_070 0.110944996 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_008566_030 0.1122198884 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
16 Hb_000061_230 0.1159194805 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
17 Hb_000377_150 0.1165302785 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
18 Hb_000428_060 0.1189296945 - - malate dehydrogenase, putative [Ricinus communis]
19 Hb_000035_480 0.1191771724 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
20 Hb_001892_070 0.1193329098 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]

Gene co-expression network

sample Hb_000615_050 Hb_000615_050 Hb_001662_130 Hb_001662_130 Hb_000615_050--Hb_001662_130 Hb_001766_050 Hb_001766_050 Hb_000615_050--Hb_001766_050 Hb_000649_140 Hb_000649_140 Hb_000615_050--Hb_000649_140 Hb_158530_020 Hb_158530_020 Hb_000615_050--Hb_158530_020 Hb_004951_060 Hb_004951_060 Hb_000615_050--Hb_004951_060 Hb_001541_120 Hb_001541_120 Hb_000615_050--Hb_001541_120 Hb_001662_130--Hb_004951_060 Hb_000080_130 Hb_000080_130 Hb_001662_130--Hb_000080_130 Hb_000590_120 Hb_000590_120 Hb_001662_130--Hb_000590_120 Hb_015675_040 Hb_015675_040 Hb_001662_130--Hb_015675_040 Hb_001662_130--Hb_001766_050 Hb_005653_070 Hb_005653_070 Hb_001662_130--Hb_005653_070 Hb_001766_050--Hb_001541_120 Hb_008421_020 Hb_008421_020 Hb_001766_050--Hb_008421_020 Hb_000928_070 Hb_000928_070 Hb_001766_050--Hb_000928_070 Hb_000130_220 Hb_000130_220 Hb_001766_050--Hb_000130_220 Hb_062226_060 Hb_062226_060 Hb_001766_050--Hb_062226_060 Hb_003106_100 Hb_003106_100 Hb_000649_140--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_000649_140--Hb_002876_020 Hb_000700_040 Hb_000700_040 Hb_000649_140--Hb_000700_040 Hb_001307_030 Hb_001307_030 Hb_000649_140--Hb_001307_030 Hb_011249_020 Hb_011249_020 Hb_000649_140--Hb_011249_020 Hb_000428_060 Hb_000428_060 Hb_000649_140--Hb_000428_060 Hb_158530_020--Hb_015675_040 Hb_000504_180 Hb_000504_180 Hb_158530_020--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_158530_020--Hb_000185_220 Hb_158530_020--Hb_062226_060 Hb_006059_010 Hb_006059_010 Hb_158530_020--Hb_006059_010 Hb_000023_360 Hb_000023_360 Hb_158530_020--Hb_000023_360 Hb_004951_060--Hb_062226_060 Hb_000394_180 Hb_000394_180 Hb_004951_060--Hb_000394_180 Hb_007192_030 Hb_007192_030 Hb_004951_060--Hb_007192_030 Hb_000317_260 Hb_000317_260 Hb_004951_060--Hb_000317_260 Hb_006846_150 Hb_006846_150 Hb_004951_060--Hb_006846_150 Hb_001541_120--Hb_000928_070 Hb_006740_030 Hb_006740_030 Hb_001541_120--Hb_006740_030 Hb_000140_090 Hb_000140_090 Hb_001541_120--Hb_000140_090 Hb_001541_120--Hb_008421_020 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50876 3.31017 3.56375 5.72201 1.13148 1.54294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.08441 5.6478 5.18125 3.46877 7.40949

CAGE analysis