Hb_000616_010

Information

Type -
Description -
Location Contig616: 10388-11430
Sequence    

Annotation

kegg
ID rcu:RCOM_0338850
description hypothetical protein
nr
ID XP_002531987.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9T068
description EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1
trembl
ID B9T176
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0338850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51219: 10143-10644 , PASA_asmbl_51220: 10778-11391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000616_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000692_110 0.1025949476 - - PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
3 Hb_021346_020 0.106115509 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
4 Hb_005766_010 0.1172792337 - - serine carboxypeptidase, putative [Ricinus communis]
5 Hb_000866_190 0.1222631548 - - transcription factor, putative [Ricinus communis]
6 Hb_014250_010 0.1222645077 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
7 Hb_005663_090 0.1285394108 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
8 Hb_006469_090 0.1318401605 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
9 Hb_083412_010 0.1327982393 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
10 Hb_000189_160 0.1339705961 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
11 Hb_009554_030 0.1340908938 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
12 Hb_033312_050 0.1347203867 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
13 Hb_001832_110 0.136457633 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
14 Hb_000018_120 0.1383285004 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_000594_160 0.1398462016 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
16 Hb_001135_010 0.1447107915 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
17 Hb_002503_050 0.147043037 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
18 Hb_015001_030 0.1481711565 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
19 Hb_000336_280 0.1482684633 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
20 Hb_000760_080 0.1502153398 - - mutt domain protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000616_010 Hb_000616_010 Hb_000692_110 Hb_000692_110 Hb_000616_010--Hb_000692_110 Hb_021346_020 Hb_021346_020 Hb_000616_010--Hb_021346_020 Hb_005766_010 Hb_005766_010 Hb_000616_010--Hb_005766_010 Hb_000866_190 Hb_000866_190 Hb_000616_010--Hb_000866_190 Hb_014250_010 Hb_014250_010 Hb_000616_010--Hb_014250_010 Hb_005663_090 Hb_005663_090 Hb_000616_010--Hb_005663_090 Hb_001189_100 Hb_001189_100 Hb_000692_110--Hb_001189_100 Hb_009554_030 Hb_009554_030 Hb_000692_110--Hb_009554_030 Hb_008066_080 Hb_008066_080 Hb_000692_110--Hb_008066_080 Hb_000692_110--Hb_005766_010 Hb_000594_160 Hb_000594_160 Hb_000692_110--Hb_000594_160 Hb_015001_030 Hb_015001_030 Hb_021346_020--Hb_015001_030 Hb_002918_120 Hb_002918_120 Hb_021346_020--Hb_002918_120 Hb_021346_020--Hb_014250_010 Hb_004446_060 Hb_004446_060 Hb_021346_020--Hb_004446_060 Hb_021346_020--Hb_005766_010 Hb_005766_010--Hb_000594_160 Hb_005766_010--Hb_014250_010 Hb_005766_010--Hb_000866_190 Hb_000096_210 Hb_000096_210 Hb_005766_010--Hb_000096_210 Hb_000017_320 Hb_000017_320 Hb_005766_010--Hb_000017_320 Hb_005731_070 Hb_005731_070 Hb_005766_010--Hb_005731_070 Hb_000866_190--Hb_009554_030 Hb_006469_090 Hb_006469_090 Hb_000866_190--Hb_006469_090 Hb_000866_190--Hb_014250_010 Hb_015306_010 Hb_015306_010 Hb_000866_190--Hb_015306_010 Hb_001135_010 Hb_001135_010 Hb_000866_190--Hb_001135_010 Hb_014250_010--Hb_000096_210 Hb_014250_010--Hb_009554_030 Hb_014250_010--Hb_015001_030 Hb_001638_150 Hb_001638_150 Hb_014250_010--Hb_001638_150 Hb_001439_010 Hb_001439_010 Hb_005663_090--Hb_001439_010 Hb_000337_030 Hb_000337_030 Hb_005663_090--Hb_000337_030 Hb_000680_070 Hb_000680_070 Hb_005663_090--Hb_000680_070 Hb_005663_090--Hb_006469_090 Hb_005168_020 Hb_005168_020 Hb_005663_090--Hb_005168_020 Hb_005663_090--Hb_005731_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0267999 0.862119 2.59361 1.73465 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.176215 2.63932 1.66307

CAGE analysis