Hb_000616_020

Information

Type -
Description -
Location Contig616: 20976-22402
Sequence    

Annotation

kegg
ID cmo:103484889
description cysteine desulfurase 1, mitochondrial
nr
ID XP_012079479.1
description PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID O49543
description Cysteine desulfurase, mitochondrial OS=Arabidopsis thaliana GN=NIFS1 PE=1 SV=1
trembl
ID B9HG88
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15360g PE=3 SV=1
Gene Ontology
ID GO:0005524
description cysteine desulfurase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51222: 20573-22393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000616_020 0.0 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000327_340 0.0686743094 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
3 Hb_000077_370 0.0740307234 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]
4 Hb_001247_070 0.0937085946 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
5 Hb_001268_350 0.0942018044 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
6 Hb_000270_760 0.0983691008 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
7 Hb_006847_040 0.1067963596 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
8 Hb_005699_090 0.1079561442 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
9 Hb_001516_100 0.1096831026 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
10 Hb_002524_040 0.1099190626 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
11 Hb_000244_220 0.1102276065 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
12 Hb_000229_030 0.1111846572 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73710 [Jatropha curcas]
13 Hb_000229_020 0.1113470731 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]
14 Hb_124315_020 0.1141230506 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_001789_210 0.1151513639 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
16 Hb_000139_090 0.1157028509 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
17 Hb_007576_120 0.1162898382 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
18 Hb_001700_040 0.1194571256 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
19 Hb_000304_050 0.1200811682 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
20 Hb_001930_010 0.1205101616 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]

Gene co-expression network

sample Hb_000616_020 Hb_000616_020 Hb_000327_340 Hb_000327_340 Hb_000616_020--Hb_000327_340 Hb_000077_370 Hb_000077_370 Hb_000616_020--Hb_000077_370 Hb_001247_070 Hb_001247_070 Hb_000616_020--Hb_001247_070 Hb_001268_350 Hb_001268_350 Hb_000616_020--Hb_001268_350 Hb_000270_760 Hb_000270_760 Hb_000616_020--Hb_000270_760 Hb_006847_040 Hb_006847_040 Hb_000616_020--Hb_006847_040 Hb_000327_340--Hb_000270_760 Hb_000244_220 Hb_000244_220 Hb_000327_340--Hb_000244_220 Hb_000327_340--Hb_001268_350 Hb_005699_090 Hb_005699_090 Hb_000327_340--Hb_005699_090 Hb_000343_030 Hb_000343_030 Hb_000327_340--Hb_000343_030 Hb_000077_370--Hb_001247_070 Hb_010578_060 Hb_010578_060 Hb_000077_370--Hb_010578_060 Hb_000077_370--Hb_001268_350 Hb_000390_070 Hb_000390_070 Hb_000077_370--Hb_000390_070 Hb_001930_010 Hb_001930_010 Hb_000077_370--Hb_001930_010 Hb_000139_090 Hb_000139_090 Hb_001247_070--Hb_000139_090 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001247_070--Hb_001930_010 Hb_002188_110 Hb_002188_110 Hb_001247_070--Hb_002188_110 Hb_000174_220 Hb_000174_220 Hb_001247_070--Hb_000174_220 Hb_004718_010 Hb_004718_010 Hb_001268_350--Hb_004718_010 Hb_000035_290 Hb_000035_290 Hb_001268_350--Hb_000035_290 Hb_002784_110 Hb_002784_110 Hb_001268_350--Hb_002784_110 Hb_001268_350--Hb_005699_090 Hb_014267_010 Hb_014267_010 Hb_001268_350--Hb_014267_010 Hb_000318_510 Hb_000318_510 Hb_000270_760--Hb_000318_510 Hb_001700_040 Hb_001700_040 Hb_000270_760--Hb_001700_040 Hb_000270_760--Hb_000244_220 Hb_000856_310 Hb_000856_310 Hb_000270_760--Hb_000856_310 Hb_003531_060 Hb_003531_060 Hb_000270_760--Hb_003531_060 Hb_045793_010 Hb_045793_010 Hb_006847_040--Hb_045793_010 Hb_001021_170 Hb_001021_170 Hb_006847_040--Hb_001021_170 Hb_000025_360 Hb_000025_360 Hb_006847_040--Hb_000025_360 Hb_076693_020 Hb_076693_020 Hb_006847_040--Hb_076693_020 Hb_006847_040--Hb_000174_220 Hb_015807_070 Hb_015807_070 Hb_006847_040--Hb_015807_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.5664 95.658 8.60562 19.3307 65.4054 78.6389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.4269 33.1134 63.3548 68.3639 42.3464

CAGE analysis