Hb_000616_040

Information

Type transcription factor
Description TF Family: M-type
Location Contig616: 40165-42904
Sequence    

Annotation

kegg
ID rcu:RCOM_0339020
description mads box protein, putative
nr
ID XP_002531994.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q9FKK2
description Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1
trembl
ID B9T168
description Mads box protein, putative OS=Ricinus communis GN=RCOM_0339020 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000616_040 0.0 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
2 Hb_010560_040 0.1286155007 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
3 Hb_009838_010 0.1340421804 - - -
4 Hb_000162_140 0.1352208885 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
5 Hb_000200_290 0.139396357 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
6 Hb_000742_110 0.1396492544 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
7 Hb_003097_210 0.1500927735 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
8 Hb_000648_020 0.1504882002 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
9 Hb_009393_210 0.1579864576 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
10 Hb_003209_200 0.1586784467 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
11 Hb_181600_010 0.1590001355 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
12 Hb_000424_210 0.1599197237 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
13 Hb_000907_170 0.1654091196 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_048476_050 0.1654660217 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
15 Hb_026048_070 0.1655013279 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
16 Hb_000196_080 0.1668168831 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
17 Hb_000454_070 0.1677735979 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
18 Hb_005839_110 0.1697381813 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
19 Hb_001153_020 0.1698420857 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
20 Hb_001700_020 0.170456042 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000616_040 Hb_000616_040 Hb_010560_040 Hb_010560_040 Hb_000616_040--Hb_010560_040 Hb_009838_010 Hb_009838_010 Hb_000616_040--Hb_009838_010 Hb_000162_140 Hb_000162_140 Hb_000616_040--Hb_000162_140 Hb_000200_290 Hb_000200_290 Hb_000616_040--Hb_000200_290 Hb_000742_110 Hb_000742_110 Hb_000616_040--Hb_000742_110 Hb_003097_210 Hb_003097_210 Hb_000616_040--Hb_003097_210 Hb_010560_040--Hb_000742_110 Hb_010560_040--Hb_003097_210 Hb_000865_070 Hb_000865_070 Hb_010560_040--Hb_000865_070 Hb_155764_010 Hb_155764_010 Hb_010560_040--Hb_155764_010 Hb_048476_050 Hb_048476_050 Hb_010560_040--Hb_048476_050 Hb_001427_230 Hb_001427_230 Hb_010560_040--Hb_001427_230 Hb_003209_200 Hb_003209_200 Hb_009838_010--Hb_003209_200 Hb_009838_010--Hb_000200_290 Hb_003861_120 Hb_003861_120 Hb_009838_010--Hb_003861_120 Hb_009838_010--Hb_000162_140 Hb_000196_080 Hb_000196_080 Hb_009838_010--Hb_000196_080 Hb_005839_110 Hb_005839_110 Hb_000162_140--Hb_005839_110 Hb_003147_050 Hb_003147_050 Hb_000162_140--Hb_003147_050 Hb_002659_040 Hb_002659_040 Hb_000162_140--Hb_002659_040 Hb_001616_060 Hb_001616_060 Hb_000162_140--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_000162_140--Hb_003929_120 Hb_002078_460 Hb_002078_460 Hb_000162_140--Hb_002078_460 Hb_001153_020 Hb_001153_020 Hb_000200_290--Hb_001153_020 Hb_000454_070 Hb_000454_070 Hb_000200_290--Hb_000454_070 Hb_181600_010 Hb_181600_010 Hb_000200_290--Hb_181600_010 Hb_002835_100 Hb_002835_100 Hb_000200_290--Hb_002835_100 Hb_021443_080 Hb_021443_080 Hb_000200_290--Hb_021443_080 Hb_000742_110--Hb_003097_210 Hb_000742_110--Hb_181600_010 Hb_000742_110--Hb_155764_010 Hb_000742_110--Hb_000865_070 Hb_000742_110--Hb_048476_050 Hb_003097_210--Hb_155764_010 Hb_001688_020 Hb_001688_020 Hb_003097_210--Hb_001688_020 Hb_003226_280 Hb_003226_280 Hb_003097_210--Hb_003226_280 Hb_000363_200 Hb_000363_200 Hb_003097_210--Hb_000363_200 Hb_003097_210--Hb_000865_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06825 2.51898 0.893476 1.24423 2.87969 5.40293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3402 13.2896 14.9395 11.235 5.04444

CAGE analysis