Hb_000617_010

Information

Type -
Description -
Location Contig617: 2540-5918
Sequence    

Annotation

kegg
ID rcu:RCOM_1433750
description serine/threonine protein phosphatase, putative (EC:3.1.3.16)
nr
ID KDP23463.1
description hypothetical protein JCGZ_23296 [Jatropha curcas]
swissprot
ID O82734
description Serine/threonine-protein phosphatase PP1 isozyme 8 OS=Arabidopsis thaliana GN=TOPP8 PE=2 SV=3
trembl
ID A0A067JKW0
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_23296 PE=3 SV=1
Gene Ontology
ID GO:0005737
description serine threonine-protein phosphatase pp1 isozyme 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51247: 2663-2800 , PASA_asmbl_51248: 2832-5998 , PASA_asmbl_51249: 3104-3401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_010 0.0 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
2 Hb_001856_180 0.0769375116 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
3 Hb_000345_160 0.0812339395 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
4 Hb_120982_010 0.0815282072 - - hypothetical protein CICLE_v10003116mg, partial [Citrus clementina]
5 Hb_000107_230 0.0851373881 - - unknown [Medicago truncatula]
6 Hb_010150_020 0.0862487252 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
7 Hb_004102_170 0.0867594599 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
8 Hb_000170_090 0.0874581932 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
9 Hb_001377_310 0.0875759931 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
10 Hb_004452_110 0.0897619374 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
11 Hb_001635_160 0.0908906048 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
12 Hb_000022_020 0.0919148301 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
13 Hb_000035_110 0.0921917075 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
14 Hb_002883_030 0.0928880805 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
15 Hb_000300_270 0.0930056438 - - cationic amino acid transporter, putative [Ricinus communis]
16 Hb_021374_010 0.0940832096 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
17 Hb_000046_570 0.095320251 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
18 Hb_001481_060 0.0955145771 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
19 Hb_001922_150 0.0960644231 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
20 Hb_003912_040 0.097998886 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]

Gene co-expression network

sample Hb_000617_010 Hb_000617_010 Hb_001856_180 Hb_001856_180 Hb_000617_010--Hb_001856_180 Hb_000345_160 Hb_000345_160 Hb_000617_010--Hb_000345_160 Hb_120982_010 Hb_120982_010 Hb_000617_010--Hb_120982_010 Hb_000107_230 Hb_000107_230 Hb_000617_010--Hb_000107_230 Hb_010150_020 Hb_010150_020 Hb_000617_010--Hb_010150_020 Hb_004102_170 Hb_004102_170 Hb_000617_010--Hb_004102_170 Hb_001856_180--Hb_000345_160 Hb_007248_030 Hb_007248_030 Hb_001856_180--Hb_007248_030 Hb_007062_040 Hb_007062_040 Hb_001856_180--Hb_007062_040 Hb_001405_210 Hb_001405_210 Hb_001856_180--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_001856_180--Hb_000702_090 Hb_001377_310 Hb_001377_310 Hb_001856_180--Hb_001377_310 Hb_004037_020 Hb_004037_020 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000049_020 Hb_000049_020 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110 Hb_000035_110 Hb_000035_110 Hb_120982_010--Hb_000035_110 Hb_007831_010 Hb_007831_010 Hb_120982_010--Hb_007831_010 Hb_004020_040 Hb_004020_040 Hb_120982_010--Hb_004020_040 Hb_001922_150 Hb_001922_150 Hb_120982_010--Hb_001922_150 Hb_120982_010--Hb_010150_020 Hb_000207_150 Hb_000207_150 Hb_000107_230--Hb_000207_150 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_000107_230--Hb_007831_010 Hb_006588_170 Hb_006588_170 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_003929_170 Hb_003929_170 Hb_000107_230--Hb_003929_170 Hb_010150_020--Hb_000035_110 Hb_010150_020--Hb_001377_310 Hb_003688_090 Hb_003688_090 Hb_010150_020--Hb_003688_090 Hb_021374_010 Hb_021374_010 Hb_010150_020--Hb_021374_010 Hb_029904_020 Hb_029904_020 Hb_010150_020--Hb_029904_020 Hb_010150_020--Hb_004020_040 Hb_000787_160 Hb_000787_160 Hb_004102_170--Hb_000787_160 Hb_004102_170--Hb_000049_020 Hb_000146_040 Hb_000146_040 Hb_004102_170--Hb_000146_040 Hb_004102_170--Hb_000345_160 Hb_004102_170--Hb_001405_210 Hb_005797_010 Hb_005797_010 Hb_004102_170--Hb_005797_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9797 16.569 18.112 24.9407 12.2523 24.7342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8147 10.7432 10.2549 10.8679 17.2007

CAGE analysis