Hb_000617_020

Information

Type -
Description -
Location Contig617: 6523-9435
Sequence    

Annotation

kegg
ID rcu:RCOM_1433740
description hypothetical protein
nr
ID XP_012088983.1
description PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JV92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23297 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51251: 8818-10535 , PASA_asmbl_51252: 7301-10480
cDNA
(Sanger)
(ID:Location)		 038_G14.ab1: 8818-10535

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_020 0.0 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
2 Hb_000174_090 0.0758231489 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
3 Hb_007426_230 0.0827933653 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
4 Hb_002835_410 0.0845313737 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
5 Hb_001771_090 0.0850742464 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
6 Hb_002609_110 0.0864695838 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
7 Hb_000175_070 0.0865012407 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
8 Hb_000189_620 0.0887315123 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
9 Hb_001518_040 0.0898991122 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
10 Hb_182026_020 0.0903328574 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
11 Hb_002149_020 0.090777368 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
12 Hb_002078_150 0.090911674 - - protein with unknown function [Ricinus communis]
13 Hb_029510_140 0.0909994596 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
14 Hb_001477_110 0.09193565 - - prohibitin, putative [Ricinus communis]
15 Hb_002097_110 0.0936153758 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_002449_020 0.0940990241 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
17 Hb_004440_090 0.0942327006 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
18 Hb_000103_180 0.0944986213 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
19 Hb_007193_100 0.0959528236 - - syntaxin family protein [Populus trichocarpa]
20 Hb_010436_070 0.0971037621 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_000617_020 Hb_000617_020 Hb_000174_090 Hb_000174_090 Hb_000617_020--Hb_000174_090 Hb_007426_230 Hb_007426_230 Hb_000617_020--Hb_007426_230 Hb_002835_410 Hb_002835_410 Hb_000617_020--Hb_002835_410 Hb_001771_090 Hb_001771_090 Hb_000617_020--Hb_001771_090 Hb_002609_110 Hb_002609_110 Hb_000617_020--Hb_002609_110 Hb_000175_070 Hb_000175_070 Hb_000617_020--Hb_000175_070 Hb_000832_140 Hb_000832_140 Hb_000174_090--Hb_000832_140 Hb_002449_020 Hb_002449_020 Hb_000174_090--Hb_002449_020 Hb_000926_250 Hb_000926_250 Hb_000174_090--Hb_000926_250 Hb_002078_150 Hb_002078_150 Hb_000174_090--Hb_002078_150 Hb_001477_110 Hb_001477_110 Hb_000174_090--Hb_001477_110 Hb_033834_040 Hb_033834_040 Hb_000174_090--Hb_033834_040 Hb_004195_160 Hb_004195_160 Hb_007426_230--Hb_004195_160 Hb_002097_110 Hb_002097_110 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180 Hb_182026_020 Hb_182026_020 Hb_002835_410--Hb_182026_020 Hb_022216_020 Hb_022216_020 Hb_002835_410--Hb_022216_020 Hb_000200_050 Hb_000200_050 Hb_002835_410--Hb_000200_050 Hb_001248_130 Hb_001248_130 Hb_002835_410--Hb_001248_130 Hb_000029_020 Hb_000029_020 Hb_002835_410--Hb_000029_020 Hb_000418_100 Hb_000418_100 Hb_002835_410--Hb_000418_100 Hb_000103_180 Hb_000103_180 Hb_001771_090--Hb_000103_180 Hb_000032_570 Hb_000032_570 Hb_001771_090--Hb_000032_570 Hb_001771_090--Hb_002449_020 Hb_002079_010 Hb_002079_010 Hb_001771_090--Hb_002079_010 Hb_006692_030 Hb_006692_030 Hb_001771_090--Hb_006692_030 Hb_000483_200 Hb_000483_200 Hb_001771_090--Hb_000483_200 Hb_000057_040 Hb_000057_040 Hb_002609_110--Hb_000057_040 Hb_001252_080 Hb_001252_080 Hb_002609_110--Hb_001252_080 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_002609_110--Hb_004195_160 Hb_002609_110--Hb_182026_020 Hb_002609_110--Hb_000418_100 Hb_007193_100 Hb_007193_100 Hb_000175_070--Hb_007193_100 Hb_000317_430 Hb_000317_430 Hb_000175_070--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_000175_070--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1634 3.83027 3.1921 8.63607 21.867 24.3301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8125 21.2716 16.9139 12.3366 3.5445

CAGE analysis