Hb_000617_070

Information

Type -
Description -
Location Contig617: 46330-48435
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02420g
description hypothetical protein
nr
ID XP_006382466.1
description hypothetical protein POPTR_0005s02420g [Populus trichocarpa]
swissprot
ID Q3MKY2
description Acetylajmalan esterase OS=Rauvolfia serpentina GN=AAE PE=1 SV=1
trembl
ID U5G9P4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s02420g PE=4 SV=1
Gene Ontology
ID GO:0016788
description acetylajmalan esterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_070 0.0 - - hypothetical protein POPTR_0005s02420g [Populus trichocarpa]
2 Hb_001174_040 0.0573824105 - - -
3 Hb_009470_010 0.0984400675 - - -
4 Hb_001141_260 0.101619027 - - Uncharacterized protein TCM_020647 [Theobroma cacao]
5 Hb_027472_250 0.1101900901 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
6 Hb_009620_080 0.1116844222 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
7 Hb_001956_170 0.1143164725 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
8 Hb_007677_010 0.1145702789 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
9 Hb_005841_070 0.1152193781 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000429_070 0.116537587 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
11 Hb_002073_160 0.1184910635 - - hypothetical protein JCGZ_21740 [Jatropha curcas]
12 Hb_001401_130 0.1191902577 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
13 Hb_000485_050 0.1201820929 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
14 Hb_000028_090 0.1208357437 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
15 Hb_003925_010 0.1213626253 - - Polygalacturonase precursor, putative [Ricinus communis]
16 Hb_000637_090 0.1237022872 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
17 Hb_002186_190 0.1286804069 - - -
18 Hb_003528_090 0.1325856599 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
19 Hb_001386_070 0.1335423098 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
20 Hb_000868_020 0.1368320019 - - -

Gene co-expression network

sample Hb_000617_070 Hb_000617_070 Hb_001174_040 Hb_001174_040 Hb_000617_070--Hb_001174_040 Hb_009470_010 Hb_009470_010 Hb_000617_070--Hb_009470_010 Hb_001141_260 Hb_001141_260 Hb_000617_070--Hb_001141_260 Hb_027472_250 Hb_027472_250 Hb_000617_070--Hb_027472_250 Hb_009620_080 Hb_009620_080 Hb_000617_070--Hb_009620_080 Hb_001956_170 Hb_001956_170 Hb_000617_070--Hb_001956_170 Hb_002073_160 Hb_002073_160 Hb_001174_040--Hb_002073_160 Hb_005841_070 Hb_005841_070 Hb_001174_040--Hb_005841_070 Hb_105885_010 Hb_105885_010 Hb_001174_040--Hb_105885_010 Hb_000480_020 Hb_000480_020 Hb_001174_040--Hb_000480_020 Hb_001174_040--Hb_009620_080 Hb_000637_090 Hb_000637_090 Hb_009470_010--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_009470_010--Hb_007677_010 Hb_009470_010--Hb_001956_170 Hb_002186_190 Hb_002186_190 Hb_009470_010--Hb_002186_190 Hb_009896_010 Hb_009896_010 Hb_009470_010--Hb_009896_010 Hb_003925_010 Hb_003925_010 Hb_009470_010--Hb_003925_010 Hb_000243_240 Hb_000243_240 Hb_001141_260--Hb_000243_240 Hb_004449_100 Hb_004449_100 Hb_001141_260--Hb_004449_100 Hb_000959_200 Hb_000959_200 Hb_001141_260--Hb_000959_200 Hb_001141_260--Hb_002186_190 Hb_002215_020 Hb_002215_020 Hb_001141_260--Hb_002215_020 Hb_027472_250--Hb_009620_080 Hb_000028_090 Hb_000028_090 Hb_027472_250--Hb_000028_090 Hb_000485_050 Hb_000485_050 Hb_027472_250--Hb_000485_050 Hb_027472_250--Hb_003925_010 Hb_002757_040 Hb_002757_040 Hb_027472_250--Hb_002757_040 Hb_000429_070 Hb_000429_070 Hb_027472_250--Hb_000429_070 Hb_009620_080--Hb_000028_090 Hb_009620_080--Hb_000485_050 Hb_009620_080--Hb_002757_040 Hb_010327_060 Hb_010327_060 Hb_009620_080--Hb_010327_060 Hb_009620_080--Hb_003925_010 Hb_001956_170--Hb_007677_010 Hb_001956_170--Hb_000637_090 Hb_001956_170--Hb_009896_010 Hb_001956_170--Hb_003925_010 Hb_001956_170--Hb_002186_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.873002 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0136991 0.070464

CAGE analysis