Hb_000617_090

Information

Type -
Description -
Location Contig617: 63428-66622
Sequence    

Annotation

kegg
ID rcu:RCOM_1433560
description hypothetical protein
nr
ID ADR30793.1
description hypoia-responsive family protein 4 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I1SN90
description Hypoia-responsive family protein 4 OS=Hevea brasiliensis GN=HR4 PE=2 SV=1
Gene Ontology
ID GO:0016021
description hypoxia induced protein conserved region containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51259: 63553-66432 , PASA_asmbl_51260: 64553-65030 , PASA_asmbl_51262: 65287-65406
cDNA
(Sanger)
(ID:Location)		 002_C11.ab1: 63558-66308 , 009_B12.ab1: 63558-66308 , 012_F09.ab1: 63554-66303 , 015_H01.ab1: 63554-66301 , 033_C14.ab1: 63558-66308 , 035_A18.ab1: 63556-66308 , 035_B02.ab1: 63553-66308 , 046_B20.ab1: 63555-66308 , 047_E10.ab1: 63558-66308

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_090 0.0 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
2 Hb_000312_090 0.0526165981 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
3 Hb_001269_270 0.0636274688 - - 60S ribosomal protein L27B [Hevea brasiliensis]
4 Hb_003226_210 0.0727971976 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
5 Hb_026398_010 0.0747011614 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
6 Hb_001221_310 0.0747512615 - - sec61 gamma subunit, putative [Ricinus communis]
7 Hb_003125_150 0.0757981459 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
8 Hb_001638_260 0.0767733268 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
9 Hb_000948_210 0.0781332635 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
10 Hb_009851_100 0.0785302899 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
11 Hb_002660_030 0.0803602287 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000699_160 0.082244913 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
13 Hb_002835_320 0.0824492844 - - 60S ribosomal protein L27B [Hevea brasiliensis]
14 Hb_001045_080 0.0830117821 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
15 Hb_000526_150 0.0866414468 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
16 Hb_005496_030 0.0878812962 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
17 Hb_010672_060 0.0905128179 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
18 Hb_019516_100 0.0910108131 - - 40S ribosomal protein S14, putative [Ricinus communis]
19 Hb_001214_160 0.0925655554 - - 60S ribosomal protein L27B [Hevea brasiliensis]
20 Hb_002588_010 0.0945882515 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]

Gene co-expression network

sample Hb_000617_090 Hb_000617_090 Hb_000312_090 Hb_000312_090 Hb_000617_090--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_000617_090--Hb_001269_270 Hb_003226_210 Hb_003226_210 Hb_000617_090--Hb_003226_210 Hb_026398_010 Hb_026398_010 Hb_000617_090--Hb_026398_010 Hb_001221_310 Hb_001221_310 Hb_000617_090--Hb_001221_310 Hb_003125_150 Hb_003125_150 Hb_000617_090--Hb_003125_150 Hb_000312_090--Hb_001221_310 Hb_009851_100 Hb_009851_100 Hb_000312_090--Hb_009851_100 Hb_000312_090--Hb_003125_150 Hb_001045_080 Hb_001045_080 Hb_000312_090--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_000312_090--Hb_002835_320 Hb_001269_270--Hb_003125_150 Hb_001638_260 Hb_001638_260 Hb_001269_270--Hb_001638_260 Hb_001269_270--Hb_001045_080 Hb_000526_150 Hb_000526_150 Hb_001269_270--Hb_000526_150 Hb_001269_270--Hb_009851_100 Hb_001214_160 Hb_001214_160 Hb_003226_210--Hb_001214_160 Hb_000283_110 Hb_000283_110 Hb_003226_210--Hb_000283_110 Hb_006816_530 Hb_006816_530 Hb_003226_210--Hb_006816_530 Hb_002660_030 Hb_002660_030 Hb_003226_210--Hb_002660_030 Hb_000134_070 Hb_000134_070 Hb_003226_210--Hb_000134_070 Hb_000363_480 Hb_000363_480 Hb_003226_210--Hb_000363_480 Hb_172221_010 Hb_172221_010 Hb_026398_010--Hb_172221_010 Hb_011311_010 Hb_011311_010 Hb_026398_010--Hb_011311_010 Hb_026398_010--Hb_002660_030 Hb_000329_020 Hb_000329_020 Hb_026398_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_026398_010--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_026398_010--Hb_002588_010 Hb_000699_160 Hb_000699_160 Hb_001221_310--Hb_000699_160 Hb_006452_040 Hb_006452_040 Hb_001221_310--Hb_006452_040 Hb_010672_060 Hb_010672_060 Hb_001221_310--Hb_010672_060 Hb_001155_040 Hb_001155_040 Hb_001221_310--Hb_001155_040 Hb_003125_150--Hb_001045_080 Hb_003125_150--Hb_009851_100 Hb_007479_020 Hb_007479_020 Hb_003125_150--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_003125_150--Hb_000120_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.989 29.8362 78.0983 118.904 83.5099 149.179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
286.71 513.046 153.098 89.2607 32.7838

CAGE analysis