Hb_000617_100

Information

Type -
Description -
Location Contig617: 69664-75884
Sequence    

Annotation

kegg
ID rcu:RCOM_1433520
description DNA binding protein, putative
nr
ID XP_012088997.1
description PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5FUE4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01710g PE=4 SV=1
Gene Ontology
ID GO:0004842
description transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51263: 69627-75772 , PASA_asmbl_51266: 72647-73116 , PASA_asmbl_51267: 73299-73803
cDNA
(Sanger)
(ID:Location)		 029_B13.ab1: 75618-75743

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_100 0.0 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
2 Hb_007576_110 0.0585477927 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
3 Hb_003549_150 0.0643777896 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
4 Hb_014361_070 0.0651851509 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
5 Hb_000683_070 0.0661910746 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
6 Hb_001195_560 0.0670436811 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
7 Hb_001051_080 0.0675098791 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
8 Hb_000120_430 0.0676726859 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
9 Hb_000366_120 0.0683431264 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
10 Hb_000789_310 0.0687104103 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
11 Hb_000680_090 0.0690825158 - - Protein SEY1, putative [Ricinus communis]
12 Hb_001635_160 0.0714161737 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
13 Hb_116349_070 0.0715508376 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
14 Hb_005460_050 0.0733901936 - - COR413-PM2, putative [Ricinus communis]
15 Hb_000390_320 0.0749937483 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
16 Hb_005503_040 0.0754223478 - - PREDICTED: AMP deaminase [Jatropha curcas]
17 Hb_017700_010 0.0763694928 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
18 Hb_000260_330 0.0768197071 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
19 Hb_004195_200 0.0775634982 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
20 Hb_000975_040 0.0775642595 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]

Gene co-expression network

sample Hb_000617_100 Hb_000617_100 Hb_007576_110 Hb_007576_110 Hb_000617_100--Hb_007576_110 Hb_003549_150 Hb_003549_150 Hb_000617_100--Hb_003549_150 Hb_014361_070 Hb_014361_070 Hb_000617_100--Hb_014361_070 Hb_000683_070 Hb_000683_070 Hb_000617_100--Hb_000683_070 Hb_001195_560 Hb_001195_560 Hb_000617_100--Hb_001195_560 Hb_001051_080 Hb_001051_080 Hb_000617_100--Hb_001051_080 Hb_000789_310 Hb_000789_310 Hb_007576_110--Hb_000789_310 Hb_000366_120 Hb_000366_120 Hb_007576_110--Hb_000366_120 Hb_007576_110--Hb_014361_070 Hb_000190_120 Hb_000190_120 Hb_007576_110--Hb_000190_120 Hb_001409_020 Hb_001409_020 Hb_007576_110--Hb_001409_020 Hb_002375_010 Hb_002375_010 Hb_007576_110--Hb_002375_010 Hb_007416_300 Hb_007416_300 Hb_003549_150--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003549_150--Hb_010381_090 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040 Hb_000975_040 Hb_000975_040 Hb_014361_070--Hb_000975_040 Hb_003371_110 Hb_003371_110 Hb_014361_070--Hb_003371_110 Hb_000289_040 Hb_000289_040 Hb_014361_070--Hb_000289_040 Hb_002823_030 Hb_002823_030 Hb_014361_070--Hb_002823_030 Hb_001195_320 Hb_001195_320 Hb_014361_070--Hb_001195_320 Hb_005503_040 Hb_005503_040 Hb_000683_070--Hb_005503_040 Hb_021409_040 Hb_021409_040 Hb_000683_070--Hb_021409_040 Hb_000683_070--Hb_000366_120 Hb_001369_130 Hb_001369_130 Hb_000683_070--Hb_001369_130 Hb_000982_060 Hb_000982_060 Hb_000683_070--Hb_000982_060 Hb_007426_150 Hb_007426_150 Hb_001195_560--Hb_007426_150 Hb_003018_130 Hb_003018_130 Hb_001195_560--Hb_003018_130 Hb_028308_010 Hb_028308_010 Hb_001195_560--Hb_028308_010 Hb_001195_560--Hb_014361_070 Hb_001195_560--Hb_002823_030 Hb_004631_180 Hb_004631_180 Hb_001051_080--Hb_004631_180 Hb_001051_080--Hb_007416_300 Hb_000120_430 Hb_000120_430 Hb_001051_080--Hb_000120_430 Hb_033834_030 Hb_033834_030 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0677 26.4595 22.9384 33.2668 34.6527 34.7651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4619 17.2346 21.1691 26.8295 15.6682

CAGE analysis