Hb_000617_150

Information

Type -
Description -
Location Contig617: 101547-105498
Sequence    

Annotation

kegg
ID rcu:RCOM_0118950
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012092877.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
swissprot
ID Q9M2C8
description Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1
trembl
ID A0A067JBQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00024 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51269: 102162-104348 , PASA_asmbl_51271: 81507-113327 , PASA_asmbl_51273: 101567-101767 , PASA_asmbl_51276: 102296-103938 , PASA_asmbl_51280: 104748-104831
cDNA
(Sanger)
(ID:Location)		 007_M02.ab1: 81615-113263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_150 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
2 Hb_000120_680 0.0504576316 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
3 Hb_001699_130 0.0616531607 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
4 Hb_172932_010 0.0659625555 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_011534_030 0.0675540395 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
6 Hb_001454_190 0.0693149216 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
7 Hb_008695_100 0.0750959138 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
8 Hb_002235_280 0.0760256696 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
9 Hb_003053_020 0.0779848579 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
10 Hb_000696_040 0.0786526642 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_010608_050 0.0808786931 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
12 Hb_005162_070 0.0826497269 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000240_090 0.0857020791 - - Rab5 [Hevea brasiliensis]
14 Hb_009113_070 0.0864155456 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
15 Hb_016901_010 0.0867039597 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
16 Hb_000072_080 0.0869722783 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
17 Hb_019263_020 0.0882122935 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
18 Hb_011030_020 0.0901886429 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
19 Hb_031862_110 0.0906108876 - - calcium-dependent protein kinase [Hevea brasiliensis]
20 Hb_086639_030 0.0911159015 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000617_150 Hb_000617_150 Hb_000120_680 Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_001699_130 Hb_001699_130 Hb_000617_150--Hb_001699_130 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_000617_150--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_000617_150--Hb_001454_190 Hb_008695_100 Hb_008695_100 Hb_000617_150--Hb_008695_100 Hb_000240_090 Hb_000240_090 Hb_000120_680--Hb_000240_090 Hb_004635_100 Hb_004635_100 Hb_000120_680--Hb_004635_100 Hb_000563_250 Hb_000563_250 Hb_000120_680--Hb_000563_250 Hb_000120_680--Hb_001699_130 Hb_000622_090 Hb_000622_090 Hb_000120_680--Hb_000622_090 Hb_000696_040 Hb_000696_040 Hb_001699_130--Hb_000696_040 Hb_000723_080 Hb_000723_080 Hb_001699_130--Hb_000723_080 Hb_010608_050 Hb_010608_050 Hb_001699_130--Hb_010608_050 Hb_016901_010 Hb_016901_010 Hb_001699_130--Hb_016901_010 Hb_172932_010--Hb_011534_030 Hb_172932_010--Hb_001454_190 Hb_009113_070 Hb_009113_070 Hb_172932_010--Hb_009113_070 Hb_086639_030 Hb_086639_030 Hb_172932_010--Hb_086639_030 Hb_002235_280 Hb_002235_280 Hb_172932_010--Hb_002235_280 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_019263_020 Hb_019263_020 Hb_011534_030--Hb_019263_020 Hb_011534_030--Hb_009113_070 Hb_011534_030--Hb_001454_190 Hb_012325_020 Hb_012325_020 Hb_001454_190--Hb_012325_020 Hb_001454_190--Hb_016901_010 Hb_000002_050 Hb_000002_050 Hb_001454_190--Hb_000002_050 Hb_008695_100--Hb_000723_080 Hb_000567_120 Hb_000567_120 Hb_008695_100--Hb_000567_120 Hb_005162_070 Hb_005162_070 Hb_008695_100--Hb_005162_070 Hb_008695_100--Hb_010608_050 Hb_008695_100--Hb_002235_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.2516 7.30035 5.1716 6.66728 10.8318 10.2525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6085 22.5194 28.5818 9.30197 9.02085

CAGE analysis