Hb_000617_190

Information

Type -
Description -
Location Contig617: 133971-140568
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01760g
description POPTRDRAFT_1096163; hypothetical protein
nr
ID XP_012089000.1
description PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
swissprot
ID Q3UDW8
description Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus GN=Hgsnat PE=1 SV=2
trembl
ID A0A067JKX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23306 PE=4 SV=1
Gene Ontology
ID GO:0016740
description heparan-alpha-glucosaminide n-acetyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51268: 134046-137062 , PASA_asmbl_51275: 108552-137057 , PASA_asmbl_51281: 137574-137823 , PASA_asmbl_51283: 140270-140563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_190 0.0 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
2 Hb_000665_260 0.0842687779 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
3 Hb_012539_110 0.0855028602 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
4 Hb_013358_060 0.0897298437 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
5 Hb_000856_300 0.0932835414 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
6 Hb_000035_100 0.0985670085 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_002600_080 0.0992142463 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000926_150 0.0997536661 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
9 Hb_000220_120 0.1000174609 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
10 Hb_005305_100 0.1009335917 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
11 Hb_000318_150 0.1023098788 - - RNA-binding protein Nova-1, putative [Ricinus communis]
12 Hb_000676_040 0.1029238538 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
13 Hb_000428_030 0.103522877 - - hypothetical protein RCOM_1520720 [Ricinus communis]
14 Hb_001488_040 0.1042326261 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
15 Hb_010775_010 0.1049127522 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
16 Hb_000373_170 0.10524513 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
17 Hb_001257_100 0.1078111396 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
18 Hb_000866_080 0.1094357876 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
19 Hb_008165_020 0.1099668773 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
20 Hb_001408_110 0.1105971936 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000617_190 Hb_000617_190 Hb_000665_260 Hb_000665_260 Hb_000617_190--Hb_000665_260 Hb_012539_110 Hb_012539_110 Hb_000617_190--Hb_012539_110 Hb_013358_060 Hb_013358_060 Hb_000617_190--Hb_013358_060 Hb_000856_300 Hb_000856_300 Hb_000617_190--Hb_000856_300 Hb_000035_100 Hb_000035_100 Hb_000617_190--Hb_000035_100 Hb_002600_080 Hb_002600_080 Hb_000617_190--Hb_002600_080 Hb_003964_110 Hb_003964_110 Hb_000665_260--Hb_003964_110 Hb_000227_320 Hb_000227_320 Hb_000665_260--Hb_000227_320 Hb_008165_020 Hb_008165_020 Hb_000665_260--Hb_008165_020 Hb_143629_020 Hb_143629_020 Hb_000665_260--Hb_143629_020 Hb_000665_260--Hb_013358_060 Hb_000331_100 Hb_000331_100 Hb_000665_260--Hb_000331_100 Hb_012539_110--Hb_000856_300 Hb_000796_240 Hb_000796_240 Hb_012539_110--Hb_000796_240 Hb_004994_090 Hb_004994_090 Hb_012539_110--Hb_004994_090 Hb_008948_140 Hb_008948_140 Hb_012539_110--Hb_008948_140 Hb_001031_090 Hb_001031_090 Hb_012539_110--Hb_001031_090 Hb_003725_010 Hb_003725_010 Hb_013358_060--Hb_003725_010 Hb_006794_020 Hb_006794_020 Hb_013358_060--Hb_006794_020 Hb_002078_470 Hb_002078_470 Hb_013358_060--Hb_002078_470 Hb_013358_060--Hb_000331_100 Hb_000428_030 Hb_000428_030 Hb_013358_060--Hb_000428_030 Hb_013358_060--Hb_000035_100 Hb_000856_300--Hb_008948_140 Hb_000926_150 Hb_000926_150 Hb_000856_300--Hb_000926_150 Hb_000580_050 Hb_000580_050 Hb_000856_300--Hb_000580_050 Hb_001008_100 Hb_001008_100 Hb_000856_300--Hb_001008_100 Hb_000373_170 Hb_000373_170 Hb_000856_300--Hb_000373_170 Hb_000787_200 Hb_000787_200 Hb_000856_300--Hb_000787_200 Hb_116349_130 Hb_116349_130 Hb_000035_100--Hb_116349_130 Hb_033312_130 Hb_033312_130 Hb_000035_100--Hb_033312_130 Hb_000030_140 Hb_000030_140 Hb_000035_100--Hb_000030_140 Hb_000035_100--Hb_008165_020 Hb_000173_190 Hb_000173_190 Hb_000035_100--Hb_000173_190 Hb_003929_210 Hb_003929_210 Hb_000035_100--Hb_003929_210 Hb_000866_080 Hb_000866_080 Hb_002600_080--Hb_000866_080 Hb_000003_400 Hb_000003_400 Hb_002600_080--Hb_000003_400 Hb_000300_250 Hb_000300_250 Hb_002600_080--Hb_000300_250 Hb_000699_210 Hb_000699_210 Hb_002600_080--Hb_000699_210 Hb_001488_040 Hb_001488_040 Hb_002600_080--Hb_001488_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69452 6.52735 3.84905 3.35092 1.60421 1.81103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.37627 1.53139 0.641536 3.96024 4.13924

CAGE analysis