Hb_000617_230

Information

Type -
Description -
Location Contig617: 177884-182460
Sequence    

Annotation

kegg
ID rcu:RCOM_1433320
description taz protein, putative
nr
ID XP_012089006.1
description PREDICTED: tafazzin isoform X1 [Jatropha curcas]
swissprot
ID Q6IV77
description Tafazzin OS=Macaca mulatta GN=TAZ PE=2 SV=1
trembl
ID B9RFB2
description Taz protein, putative OS=Ricinus communis GN=RCOM_1433320 PE=4 SV=1
Gene Ontology
ID GO:0016746
description tafazzin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51291: 177963-182265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_230 0.0 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
2 Hb_000189_600 0.0589167754 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
3 Hb_001430_080 0.0663711104 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
4 Hb_001878_050 0.066550543 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
5 Hb_003835_070 0.0689749049 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
6 Hb_001279_170 0.0712658511 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
7 Hb_001009_280 0.0729031812 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
8 Hb_008114_040 0.0758358378 - - Fanconi anemia group D2 [Gossypium arboreum]
9 Hb_000107_660 0.0759373093 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
10 Hb_002400_340 0.0762722295 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
11 Hb_060094_020 0.077501917 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
12 Hb_000339_040 0.0782063263 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
13 Hb_183510_020 0.0786364264 - - coated vesicle membrane protein, putative [Ricinus communis]
14 Hb_000565_040 0.0790247785 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
15 Hb_004837_180 0.0795220938 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
16 Hb_000077_320 0.0795668086 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
17 Hb_001789_060 0.0798371982 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
18 Hb_009911_030 0.0812545655 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
19 Hb_004994_010 0.0813994851 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
20 Hb_164390_010 0.081720119 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]

Gene co-expression network

sample Hb_000617_230 Hb_000617_230 Hb_000189_600 Hb_000189_600 Hb_000617_230--Hb_000189_600 Hb_001430_080 Hb_001430_080 Hb_000617_230--Hb_001430_080 Hb_001878_050 Hb_001878_050 Hb_000617_230--Hb_001878_050 Hb_003835_070 Hb_003835_070 Hb_000617_230--Hb_003835_070 Hb_001279_170 Hb_001279_170 Hb_000617_230--Hb_001279_170 Hb_001009_280 Hb_001009_280 Hb_000617_230--Hb_001009_280 Hb_004333_040 Hb_004333_040 Hb_000189_600--Hb_004333_040 Hb_183433_010 Hb_183433_010 Hb_000189_600--Hb_183433_010 Hb_001377_190 Hb_001377_190 Hb_000189_600--Hb_001377_190 Hb_000189_600--Hb_001430_080 Hb_000521_330 Hb_000521_330 Hb_000189_600--Hb_000521_330 Hb_000011_100 Hb_000011_100 Hb_001430_080--Hb_000011_100 Hb_001277_020 Hb_001277_020 Hb_001430_080--Hb_001277_020 Hb_004976_010 Hb_004976_010 Hb_001430_080--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001430_080--Hb_000645_170 Hb_001430_080--Hb_003835_070 Hb_000879_040 Hb_000879_040 Hb_001430_080--Hb_000879_040 Hb_000402_150 Hb_000402_150 Hb_001878_050--Hb_000402_150 Hb_000565_040 Hb_000565_040 Hb_001878_050--Hb_000565_040 Hb_003544_060 Hb_003544_060 Hb_001878_050--Hb_003544_060 Hb_008114_040 Hb_008114_040 Hb_001878_050--Hb_008114_040 Hb_002344_060 Hb_002344_060 Hb_001878_050--Hb_002344_060 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_000614_210 Hb_000614_210 Hb_003835_070--Hb_000614_210 Hb_105105_010 Hb_105105_010 Hb_003835_070--Hb_105105_010 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_001789_060 Hb_001789_060 Hb_001279_170--Hb_001789_060 Hb_000484_130 Hb_000484_130 Hb_001279_170--Hb_000484_130 Hb_000291_010 Hb_000291_010 Hb_001279_170--Hb_000291_010 Hb_001862_210 Hb_001862_210 Hb_001279_170--Hb_001862_210 Hb_002675_130 Hb_002675_130 Hb_001279_170--Hb_002675_130 Hb_000321_140 Hb_000321_140 Hb_001009_280--Hb_000321_140 Hb_183510_020 Hb_183510_020 Hb_001009_280--Hb_183510_020 Hb_002055_020 Hb_002055_020 Hb_001009_280--Hb_002055_020 Hb_002046_010 Hb_002046_010 Hb_001009_280--Hb_002046_010 Hb_027506_010 Hb_027506_010 Hb_001009_280--Hb_027506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.54401 14.2944 13.5852 7.25876 6.96869 8.40854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.4303 9.02599 7.58232 13.3866 9.15552

CAGE analysis