Hb_000617_240

Information

Type -
Description -
Location Contig617: 183491-186247
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01780g
description POPTRDRAFT_240603; hypothetical protein
nr
ID XP_012089009.1
description PREDICTED: uncharacterized protein LOC105647502 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51293: 185616-186079 , PASA_asmbl_51294: 187126-191027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_240 0.0 - - PREDICTED: uncharacterized protein LOC105647502 [Jatropha curcas]
2 Hb_000002_040 0.0704496293 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
3 Hb_016461_010 0.0732872541 - - PREDICTED: proline synthase co-transcribed bacterial homolog protein [Jatropha curcas]
4 Hb_000390_180 0.076157363 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
5 Hb_000794_050 0.0780912129 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
6 Hb_000120_270 0.0790842908 - - PREDICTED: histone deacetylase 8 [Jatropha curcas]
7 Hb_000498_010 0.0796189845 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000926_190 0.0848615832 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
9 Hb_008406_110 0.0862473192 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
10 Hb_002686_250 0.0869579082 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
11 Hb_011609_080 0.0871294574 - - uv excision repair protein rad23, putative [Ricinus communis]
12 Hb_001390_110 0.0880873973 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
13 Hb_006355_010 0.0897858928 - - PREDICTED: protein NLRC3 [Jatropha curcas]
14 Hb_000879_200 0.0913544773 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
15 Hb_000915_020 0.0925161005 - - unnamed protein product [Vitis vinifera]
16 Hb_000084_250 0.0927338793 - - nucleolar phosphoprotein, putative [Ricinus communis]
17 Hb_033720_010 0.0929208594 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
18 Hb_027760_080 0.0936200245 - - cytochrome P450, putative [Ricinus communis]
19 Hb_012098_110 0.0936436823 - - Ribonuclease 3 [Gossypium arboreum]
20 Hb_001926_030 0.0940051943 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000617_240 Hb_000617_240 Hb_000002_040 Hb_000002_040 Hb_000617_240--Hb_000002_040 Hb_016461_010 Hb_016461_010 Hb_000617_240--Hb_016461_010 Hb_000390_180 Hb_000390_180 Hb_000617_240--Hb_000390_180 Hb_000794_050 Hb_000794_050 Hb_000617_240--Hb_000794_050 Hb_000120_270 Hb_000120_270 Hb_000617_240--Hb_000120_270 Hb_000498_010 Hb_000498_010 Hb_000617_240--Hb_000498_010 Hb_002042_140 Hb_002042_140 Hb_000002_040--Hb_002042_140 Hb_000107_500 Hb_000107_500 Hb_000002_040--Hb_000107_500 Hb_000002_040--Hb_000794_050 Hb_003609_030 Hb_003609_030 Hb_000002_040--Hb_003609_030 Hb_000139_090 Hb_000139_090 Hb_000002_040--Hb_000139_090 Hb_016461_010--Hb_000390_180 Hb_003020_010 Hb_003020_010 Hb_016461_010--Hb_003020_010 Hb_016461_010--Hb_000498_010 Hb_011609_080 Hb_011609_080 Hb_016461_010--Hb_011609_080 Hb_001621_170 Hb_001621_170 Hb_016461_010--Hb_001621_170 Hb_000390_180--Hb_000498_010 Hb_000853_230 Hb_000853_230 Hb_000390_180--Hb_000853_230 Hb_001390_110 Hb_001390_110 Hb_000390_180--Hb_001390_110 Hb_006620_020 Hb_006620_020 Hb_000390_180--Hb_006620_020 Hb_001936_060 Hb_001936_060 Hb_000390_180--Hb_001936_060 Hb_000368_020 Hb_000368_020 Hb_000794_050--Hb_000368_020 Hb_000926_190 Hb_000926_190 Hb_000794_050--Hb_000926_190 Hb_033720_010 Hb_033720_010 Hb_000794_050--Hb_033720_010 Hb_000794_050--Hb_001390_110 Hb_000794_050--Hb_000853_230 Hb_000794_050--Hb_006620_020 Hb_001083_050 Hb_001083_050 Hb_000120_270--Hb_001083_050 Hb_000181_120 Hb_000181_120 Hb_000120_270--Hb_000181_120 Hb_000487_110 Hb_000487_110 Hb_000120_270--Hb_000487_110 Hb_000732_140 Hb_000732_140 Hb_000120_270--Hb_000732_140 Hb_002025_110 Hb_002025_110 Hb_000120_270--Hb_002025_110 Hb_000879_200 Hb_000879_200 Hb_000498_010--Hb_000879_200 Hb_000618_030 Hb_000618_030 Hb_000498_010--Hb_000618_030 Hb_000498_010--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_000498_010--Hb_001926_030 Hb_000498_010--Hb_000794_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.90244 4.32393 3.48424 1.24479 4.98147 5.04516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.7334 2.5524 3.08013 2.70404 2.61732

CAGE analysis