Hb_000617_260

Information

Type rubber biosynthesis
Description Gene Name: SRPP2
Location Contig617: 192536-194387
Sequence    

Annotation

kegg
ID rcu:RCOM_1433280
description Rubber elongation factor protein, putative
nr
ID AGO95096.1
description small rubber particle protein [Hevea brasiliensis]
swissprot
ID Q9MA63
description REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=1 SV=1
trembl
ID S4WC64
description Small rubber particle protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005773
description ref srpp-like protein at3g05500

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51295: 192172-194251
cDNA
(Sanger)
(ID:Location)		 011_F04.ab1: 192898-194190 , 018_O04.ab1: 192664-194187 , 025_L15.ab1: 192642-194190 , 032_M06.ab1: 192722-194187 , 040_E06.ab1: 192643-194187

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_260 0.0 rubber biosynthesis Gene Name: SRPP2 small rubber particle protein [Hevea brasiliensis]
2 Hb_000041_050 0.0974963138 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
3 Hb_000029_020 0.1059589476 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_000656_110 0.1078821086 - - nucleolysin tia-1, putative [Ricinus communis]
5 Hb_000700_110 0.107976142 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_001833_110 0.1091368686 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000898_050 0.1099119711 - - -
8 Hb_002842_020 0.1103445566 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
9 Hb_001248_130 0.1115771219 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
10 Hb_020178_070 0.111579897 - - Protein Z, putative [Ricinus communis]
11 Hb_002835_410 0.1134578918 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
12 Hb_183086_060 0.1135988284 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
13 Hb_001635_060 0.1155762584 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
14 Hb_003092_030 0.115795761 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
15 Hb_000174_070 0.1158985788 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
16 Hb_000840_210 0.1163021527 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
17 Hb_000125_190 0.1173290659 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
18 Hb_002005_020 0.1188635521 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000602_010 0.1193207687 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
20 Hb_005548_010 0.1198011613 - - PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000617_260 Hb_000617_260 Hb_000041_050 Hb_000041_050 Hb_000617_260--Hb_000041_050 Hb_000029_020 Hb_000029_020 Hb_000617_260--Hb_000029_020 Hb_000656_110 Hb_000656_110 Hb_000617_260--Hb_000656_110 Hb_000700_110 Hb_000700_110 Hb_000617_260--Hb_000700_110 Hb_001833_110 Hb_001833_110 Hb_000617_260--Hb_001833_110 Hb_000898_050 Hb_000898_050 Hb_000617_260--Hb_000898_050 Hb_000041_050--Hb_000656_110 Hb_000041_050--Hb_000700_110 Hb_007441_120 Hb_007441_120 Hb_000041_050--Hb_007441_120 Hb_000041_050--Hb_001833_110 Hb_002759_060 Hb_002759_060 Hb_000041_050--Hb_002759_060 Hb_002477_330 Hb_002477_330 Hb_000041_050--Hb_002477_330 Hb_001811_020 Hb_001811_020 Hb_000029_020--Hb_001811_020 Hb_183086_060 Hb_183086_060 Hb_000029_020--Hb_183086_060 Hb_000602_010 Hb_000602_010 Hb_000029_020--Hb_000602_010 Hb_002687_110 Hb_002687_110 Hb_000029_020--Hb_002687_110 Hb_000115_330 Hb_000115_330 Hb_000029_020--Hb_000115_330 Hb_004109_190 Hb_004109_190 Hb_000029_020--Hb_004109_190 Hb_093084_050 Hb_093084_050 Hb_000656_110--Hb_093084_050 Hb_001102_140 Hb_001102_140 Hb_000656_110--Hb_001102_140 Hb_000656_110--Hb_000700_110 Hb_003125_010 Hb_003125_010 Hb_000656_110--Hb_003125_010 Hb_001369_690 Hb_001369_690 Hb_000656_110--Hb_001369_690 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_003092_030 Hb_003092_030 Hb_000700_110--Hb_003092_030 Hb_000347_200 Hb_000347_200 Hb_000700_110--Hb_000347_200 Hb_006198_080 Hb_006198_080 Hb_000700_110--Hb_006198_080 Hb_000700_110--Hb_002477_330 Hb_001833_110--Hb_002759_060 Hb_001360_050 Hb_001360_050 Hb_001833_110--Hb_001360_050 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_001833_110--Hb_004724_340 Hb_000898_050--Hb_003092_030 Hb_037887_010 Hb_037887_010 Hb_000898_050--Hb_037887_010 Hb_001114_130 Hb_001114_130 Hb_000898_050--Hb_001114_130 Hb_000856_260 Hb_000856_260 Hb_000898_050--Hb_000856_260 Hb_000898_050--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_000898_050--Hb_006429_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
154.683 99.6144 55.1684 218.384 225.679 367.667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
470.579 251.233 459.22 247.369 60.0825

CAGE analysis