Hb_000617_300

Information

Type -
Description -
Location Contig617: 210379-210744
Sequence    

Annotation

kegg
ID rcu:RCOM_1433270
description RALFL33, putative
nr
ID XP_002512426.1
description RALFL33, putative [Ricinus communis]
swissprot
ID Q8L9P8
description Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1
trembl
ID B9RFA7
description RALFL33, putative OS=Ricinus communis GN=RCOM_1433270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 009_K05.ab1: 210187-210709 , 036_I17.ab1: 210217-210437

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_300 0.0 - - RALFL33, putative [Ricinus communis]
2 Hb_003020_200 0.1423916026 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
3 Hb_003411_120 0.1520962044 - - hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
4 Hb_001758_090 0.1527298834 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
5 Hb_003371_030 0.157561798 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
6 Hb_019053_050 0.1584038743 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000995_020 0.162865827 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001335_040 0.1629747653 - - conserved hypothetical protein [Ricinus communis]
9 Hb_102772_010 0.166282078 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011169_010 0.1669644882 - - mta/sah nucleosidase, putative [Ricinus communis]
11 Hb_000622_120 0.169131359 - - hypothetical protein [Hevea brasiliensis]
12 Hb_011900_040 0.1746382621 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
13 Hb_000115_200 0.1796413688 - - PREDICTED: endonuclease 2 [Jatropha curcas]
14 Hb_133926_010 0.1796927133 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
15 Hb_011081_010 0.1826926433 - - unnamed protein product [Coffea canephora]
16 Hb_003528_090 0.1843230392 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
17 Hb_141096_010 0.1861425005 - - PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
18 Hb_012565_010 0.1884554718 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
19 Hb_001157_120 0.1889055149 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
20 Hb_000193_130 0.1889688847 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000617_300 Hb_000617_300 Hb_003020_200 Hb_003020_200 Hb_000617_300--Hb_003020_200 Hb_003411_120 Hb_003411_120 Hb_000617_300--Hb_003411_120 Hb_001758_090 Hb_001758_090 Hb_000617_300--Hb_001758_090 Hb_003371_030 Hb_003371_030 Hb_000617_300--Hb_003371_030 Hb_019053_050 Hb_019053_050 Hb_000617_300--Hb_019053_050 Hb_000995_020 Hb_000995_020 Hb_000617_300--Hb_000995_020 Hb_011169_010 Hb_011169_010 Hb_003020_200--Hb_011169_010 Hb_004657_070 Hb_004657_070 Hb_003020_200--Hb_004657_070 Hb_007311_050 Hb_007311_050 Hb_003020_200--Hb_007311_050 Hb_102772_010 Hb_102772_010 Hb_003020_200--Hb_102772_010 Hb_000622_190 Hb_000622_190 Hb_003020_200--Hb_000622_190 Hb_001097_080 Hb_001097_080 Hb_003411_120--Hb_001097_080 Hb_147137_010 Hb_147137_010 Hb_003411_120--Hb_147137_010 Hb_003411_120--Hb_003371_030 Hb_005914_130 Hb_005914_130 Hb_003411_120--Hb_005914_130 Hb_001804_020 Hb_001804_020 Hb_003411_120--Hb_001804_020 Hb_001758_090--Hb_004657_070 Hb_000428_040 Hb_000428_040 Hb_001758_090--Hb_000428_040 Hb_003055_100 Hb_003055_100 Hb_001758_090--Hb_003055_100 Hb_007574_040 Hb_007574_040 Hb_001758_090--Hb_007574_040 Hb_001758_090--Hb_000622_190 Hb_000139_460 Hb_000139_460 Hb_003371_030--Hb_000139_460 Hb_001006_300 Hb_001006_300 Hb_003371_030--Hb_001006_300 Hb_003858_070 Hb_003858_070 Hb_003371_030--Hb_003858_070 Hb_019299_020 Hb_019299_020 Hb_003371_030--Hb_019299_020 Hb_001296_010 Hb_001296_010 Hb_003371_030--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_003371_030--Hb_013399_060 Hb_016120_030 Hb_016120_030 Hb_019053_050--Hb_016120_030 Hb_001335_040 Hb_001335_040 Hb_019053_050--Hb_001335_040 Hb_004031_060 Hb_004031_060 Hb_019053_050--Hb_004031_060 Hb_001091_040 Hb_001091_040 Hb_019053_050--Hb_001091_040 Hb_000086_530 Hb_000086_530 Hb_019053_050--Hb_000086_530 Hb_019053_050--Hb_003371_030 Hb_000995_020--Hb_102772_010 Hb_000622_230 Hb_000622_230 Hb_000995_020--Hb_000622_230 Hb_000622_120 Hb_000622_120 Hb_000995_020--Hb_000622_120 Hb_006816_060 Hb_006816_060 Hb_000995_020--Hb_006816_060 Hb_000995_020--Hb_003371_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.199837 1.61294 7.06736 218.745 0.384596 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.04372 6.91483 3.19257 9.81017 22.251

CAGE analysis