Hb_000617_310

Information

Type -
Description -
Location Contig617: 214964-220753
Sequence    

Annotation

kegg
ID rcu:RCOM_1433260
description DNA repair protein rad9, putative (EC:3.1.11.2)
nr
ID XP_012089014.1
description PREDICTED: cell cycle checkpoint control protein RAD9A [Jatropha curcas]
swissprot
ID Q9Z0F6
description Cell cycle checkpoint control protein RAD9A OS=Mus musculus GN=Rad9a PE=1 SV=1
trembl
ID B9RFA6
description DNA repair protein rad9, putative OS=Ricinus communis GN=RCOM_1433260 PE=4 SV=1
Gene Ontology
ID GO:0030896
description cell cycle checkpoint control protein rad9a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51297: 216364-217656 , PASA_asmbl_51298: 220103-220727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_310 0.0 - - PREDICTED: cell cycle checkpoint control protein RAD9A [Jatropha curcas]
2 Hb_001307_190 0.1107230975 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
3 Hb_001863_140 0.1146473217 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
4 Hb_039021_010 0.1173227185 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
5 Hb_000345_510 0.1320853464 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
6 Hb_004096_160 0.1366883807 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
7 Hb_002909_040 0.1369368385 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
8 Hb_005144_210 0.1376456532 - - conserved hypothetical protein [Ricinus communis]
9 Hb_171718_020 0.1380259087 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
10 Hb_000958_080 0.1394043795 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005730_010 0.1407504696 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
12 Hb_002897_070 0.1457363117 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
13 Hb_000187_030 0.1466886922 - - PREDICTED: cyclin-D4-1-like isoform X2 [Jatropha curcas]
14 Hb_000803_180 0.1467659998 - - hexokinase [Manihot esculenta]
15 Hb_029695_080 0.1474178192 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
16 Hb_001369_470 0.1477921858 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
17 Hb_001357_310 0.1496152852 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
18 Hb_009449_060 0.1496650597 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
19 Hb_164945_010 0.1516689988 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
20 Hb_003906_180 0.1524239481 - - unknown [Zea mays]

Gene co-expression network

sample Hb_000617_310 Hb_000617_310 Hb_001307_190 Hb_001307_190 Hb_000617_310--Hb_001307_190 Hb_001863_140 Hb_001863_140 Hb_000617_310--Hb_001863_140 Hb_039021_010 Hb_039021_010 Hb_000617_310--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_000617_310--Hb_000345_510 Hb_004096_160 Hb_004096_160 Hb_000617_310--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_000617_310--Hb_002909_040 Hb_014231_020 Hb_014231_020 Hb_001307_190--Hb_014231_020 Hb_000703_160 Hb_000703_160 Hb_001307_190--Hb_000703_160 Hb_000958_080 Hb_000958_080 Hb_001307_190--Hb_000958_080 Hb_005144_210 Hb_005144_210 Hb_001307_190--Hb_005144_210 Hb_009449_060 Hb_009449_060 Hb_001307_190--Hb_009449_060 Hb_002110_160 Hb_002110_160 Hb_001863_140--Hb_002110_160 Hb_006452_180 Hb_006452_180 Hb_001863_140--Hb_006452_180 Hb_178968_060 Hb_178968_060 Hb_001863_140--Hb_178968_060 Hb_000230_460 Hb_000230_460 Hb_001863_140--Hb_000230_460 Hb_010775_030 Hb_010775_030 Hb_001863_140--Hb_010775_030 Hb_003687_120 Hb_003687_120 Hb_001863_140--Hb_003687_120 Hb_000580_100 Hb_000580_100 Hb_039021_010--Hb_000580_100 Hb_039021_010--Hb_005144_210 Hb_000836_300 Hb_000836_300 Hb_039021_010--Hb_000836_300 Hb_004079_130 Hb_004079_130 Hb_039021_010--Hb_004079_130 Hb_003050_260 Hb_003050_260 Hb_039021_010--Hb_003050_260 Hb_002272_050 Hb_002272_050 Hb_000345_510--Hb_002272_050 Hb_003213_010 Hb_003213_010 Hb_000345_510--Hb_003213_010 Hb_006132_110 Hb_006132_110 Hb_000345_510--Hb_006132_110 Hb_000875_080 Hb_000875_080 Hb_000345_510--Hb_000875_080 Hb_000049_140 Hb_000049_140 Hb_000345_510--Hb_000049_140 Hb_002163_050 Hb_002163_050 Hb_000345_510--Hb_002163_050 Hb_004096_160--Hb_000958_080 Hb_004096_160--Hb_002909_040 Hb_004096_160--Hb_009449_060 Hb_000089_210 Hb_000089_210 Hb_004096_160--Hb_000089_210 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_000207_200 Hb_000207_200 Hb_002909_040--Hb_000207_200 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_002909_040--Hb_000089_210 Hb_002909_040--Hb_009449_060 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.525331 1.38175 2.44794 1.5245 1.4543 0.370686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.884588 0.970148 0.39812 1.04212 0.354801

CAGE analysis