Hb_000617_320

Information

Type -
Description -
Location Contig617: 223502-225200
Sequence    

Annotation

kegg
ID rcu:RCOM_1433250
description 40S ribosomal protein S21e, putative
nr
ID ADR71233.1
description 40S ribosomal protein S21B [Hevea brasiliensis]
swissprot
ID Q3E902
description 40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=1 SV=2
trembl
ID I3NMJ6
description 40S ribosomal protein S21 OS=Hevea brasiliensis GN=RPS21B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s21-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51299: 223381-225240 , PASA_asmbl_51300: 223369-225240 , PASA_asmbl_51301: 221503-225240 , PASA_asmbl_51302: 223865-224216
cDNA
(Sanger)
(ID:Location)		 018_K06.ab1: 223367-225102 , 032_E19.ab1: 223381-225175 , 033_O17.ab1: 223381-225175 , 040_N19.ab1: 223368-225157 , 041_N18.ab1: 223388-225159 , 043_J05.ab1: 223362-225236 , 043_K02.ab1: 223367-225102 , 045_C09.ab1: 223381-225175

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_320 0.0 - - 40S ribosomal protein S21B [Hevea brasiliensis]
2 Hb_007166_050 0.0582437018 - - -
3 Hb_001019_090 0.0629418559 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
4 Hb_007632_250 0.0707254925 - - conserved hypothetical protein [Ricinus communis]
5 Hb_118977_020 0.0748764203 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
6 Hb_003086_110 0.0796557419 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
7 Hb_004297_100 0.0807112132 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
8 Hb_000189_530 0.0833369041 - - 40S ribosomal protein S24B [Hevea brasiliensis]
9 Hb_027892_060 0.0855843326 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
10 Hb_017895_050 0.089020509 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
11 Hb_001437_040 0.0893340932 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
12 Hb_004204_030 0.0904333891 - - unknown [Populus trichocarpa]
13 Hb_004724_100 0.0909014253 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
14 Hb_000316_110 0.0941482253 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
15 Hb_024650_050 0.0944101362 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
16 Hb_000200_210 0.0949401717 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000366_100 0.0967258699 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
18 Hb_003874_020 0.0968372059 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
19 Hb_005611_010 0.0970776852 - - PREDICTED: protein prune homolog [Jatropha curcas]
20 Hb_134226_010 0.0989650107 - - 40S ribosomal protein S21e, putative [Ricinus communis]

Gene co-expression network

sample Hb_000617_320 Hb_000617_320 Hb_007166_050 Hb_007166_050 Hb_000617_320--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_000617_320--Hb_001019_090 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_118977_020 Hb_118977_020 Hb_000617_320--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_000617_320--Hb_003086_110 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100 Hb_007166_050--Hb_003086_110 Hb_007166_050--Hb_001019_090 Hb_007166_050--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_007166_050--Hb_001437_040 Hb_000316_110 Hb_000316_110 Hb_007166_050--Hb_000316_110 Hb_001019_090--Hb_004297_100 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_003911_040 Hb_003911_040 Hb_007632_250--Hb_003911_040 Hb_119583_010 Hb_119583_010 Hb_007632_250--Hb_119583_010 Hb_004502_030 Hb_004502_030 Hb_007632_250--Hb_004502_030 Hb_027892_060 Hb_027892_060 Hb_007632_250--Hb_027892_060 Hb_017895_050 Hb_017895_050 Hb_007632_250--Hb_017895_050 Hb_118977_020--Hb_003086_110 Hb_118977_020--Hb_001019_090 Hb_118977_020--Hb_001437_040 Hb_157854_010 Hb_157854_010 Hb_118977_020--Hb_157854_010 Hb_003086_020 Hb_003086_020 Hb_003086_110--Hb_003086_020 Hb_000272_100 Hb_000272_100 Hb_003086_110--Hb_000272_100 Hb_003086_110--Hb_001437_040 Hb_004297_100--Hb_000483_160 Hb_005611_010 Hb_005611_010 Hb_004297_100--Hb_005611_010 Hb_000200_210 Hb_000200_210 Hb_004297_100--Hb_000200_210 Hb_023732_070 Hb_023732_070 Hb_004297_100--Hb_023732_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
847.917 178.777 170.447 184.565 724.947 1191.61
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1095.11 1117.95 368.931 230.084 52.7454

CAGE analysis