Hb_000617_330

Information

Type -
Description -
Location Contig617: 238138-239695
Sequence    

Annotation

kegg
ID rcu:RCOM_1433240
description chloroplast-targeted copper chaperone, putative
nr
ID XP_012089017.1
description PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID A0A067JKX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23316 PE=4 SV=1
Gene Ontology
ID GO:0044699
description chloroplast-targeted copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51303: 237826-239759
cDNA
(Sanger)
(ID:Location)		 010_L12.ab1: 238590-239757 , 049_M01.ab1: 238857-239753

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_330 0.0 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
2 Hb_001289_010 0.0758629649 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
3 Hb_001100_070 0.0839396172 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000718_060 0.0867710011 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
5 Hb_001794_040 0.090263921 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
6 Hb_008221_200 0.0926756909 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
7 Hb_000012_350 0.0931883437 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
8 Hb_009393_090 0.0961832651 - - acyltransferase, putative [Ricinus communis]
9 Hb_003054_070 0.1006589491 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
10 Hb_012098_160 0.1037731388 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
11 Hb_001032_020 0.1060926578 - - ankyrin repeat protein [Bruguiera gymnorhiza]
12 Hb_010164_030 0.1086646107 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_005542_120 0.1086818536 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
14 Hb_001117_050 0.109134365 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
15 Hb_001268_150 0.1109981788 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_028008_040 0.1112773652 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000680_170 0.1135853721 - - hypothetical protein JCGZ_24789 [Jatropha curcas]
18 Hb_000160_250 0.1139151113 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
19 Hb_000622_050 0.1145426831 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000878_050 0.1145920125 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000617_330 Hb_000617_330 Hb_001289_010 Hb_001289_010 Hb_000617_330--Hb_001289_010 Hb_001100_070 Hb_001100_070 Hb_000617_330--Hb_001100_070 Hb_000718_060 Hb_000718_060 Hb_000617_330--Hb_000718_060 Hb_001794_040 Hb_001794_040 Hb_000617_330--Hb_001794_040 Hb_008221_200 Hb_008221_200 Hb_000617_330--Hb_008221_200 Hb_000012_350 Hb_000012_350 Hb_000617_330--Hb_000012_350 Hb_001289_010--Hb_001100_070 Hb_009393_090 Hb_009393_090 Hb_001289_010--Hb_009393_090 Hb_001289_010--Hb_000718_060 Hb_000434_060 Hb_000434_060 Hb_001289_010--Hb_000434_060 Hb_000818_090 Hb_000818_090 Hb_001289_010--Hb_000818_090 Hb_001100_070--Hb_009393_090 Hb_001100_070--Hb_000818_090 Hb_001100_070--Hb_000718_060 Hb_007270_020 Hb_007270_020 Hb_001100_070--Hb_007270_020 Hb_000718_060--Hb_009393_090 Hb_000718_060--Hb_008221_200 Hb_003873_020 Hb_003873_020 Hb_000718_060--Hb_003873_020 Hb_002066_110 Hb_002066_110 Hb_000718_060--Hb_002066_110 Hb_000718_060--Hb_007270_020 Hb_001117_050 Hb_001117_050 Hb_001794_040--Hb_001117_050 Hb_001794_040--Hb_000012_350 Hb_020738_010 Hb_020738_010 Hb_001794_040--Hb_020738_010 Hb_017383_010 Hb_017383_010 Hb_001794_040--Hb_017383_010 Hb_000032_420 Hb_000032_420 Hb_001794_040--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_001794_040--Hb_010449_010 Hb_002942_200 Hb_002942_200 Hb_008221_200--Hb_002942_200 Hb_008054_030 Hb_008054_030 Hb_008221_200--Hb_008054_030 Hb_008221_200--Hb_009393_090 Hb_008221_200--Hb_001117_050 Hb_003339_010 Hb_003339_010 Hb_008221_200--Hb_003339_010 Hb_011574_020 Hb_011574_020 Hb_000012_350--Hb_011574_020 Hb_010164_030 Hb_010164_030 Hb_000012_350--Hb_010164_030 Hb_000012_350--Hb_020738_010 Hb_001427_100 Hb_001427_100 Hb_000012_350--Hb_001427_100 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.18072 4.33776 10.4744 16.5091 0.336289 0.0418991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.044717 0 0 1.11487 11.0843

CAGE analysis