Hb_000618_030

Information

Type -
Description -
Location Contig618: 47538-52646
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_011006078.1
description PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A5BEL7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044158 PE=4 SV=1
Gene Ontology
ID GO:0009507
description serine threonine-protein kinase tousled-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51312: 48246-49774 , PASA_asmbl_51313: 48182-49713 , PASA_asmbl_51314: 51646-82749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000618_030 0.0 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
2 Hb_009627_010 0.0583138778 - - Protein dom-3, putative [Ricinus communis]
3 Hb_000025_110 0.06336766 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
4 Hb_001444_010 0.0640094041 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
5 Hb_001493_030 0.0642547404 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
6 Hb_000538_100 0.0658873305 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000879_200 0.0659245615 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
8 Hb_007317_110 0.0694837666 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
9 Hb_011139_030 0.0698941761 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
10 Hb_000498_010 0.0700505675 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_004994_040 0.0701061088 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
12 Hb_006252_040 0.071212354 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
13 Hb_000010_090 0.0717051836 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
14 Hb_020719_030 0.0723344711 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
15 Hb_048937_040 0.0724863594 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
16 Hb_006827_020 0.0749400279 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004837_190 0.0750266012 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
18 Hb_000808_270 0.0769972161 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
19 Hb_000820_170 0.0776705264 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
20 Hb_001369_180 0.0793804418 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000618_030 Hb_000618_030 Hb_009627_010 Hb_009627_010 Hb_000618_030--Hb_009627_010 Hb_000025_110 Hb_000025_110 Hb_000618_030--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000618_030--Hb_001444_010 Hb_001493_030 Hb_001493_030 Hb_000618_030--Hb_001493_030 Hb_000538_100 Hb_000538_100 Hb_000618_030--Hb_000538_100 Hb_000879_200 Hb_000879_200 Hb_000618_030--Hb_000879_200 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060 Hb_000025_110--Hb_001444_010 Hb_006252_040 Hb_006252_040 Hb_000025_110--Hb_006252_040 Hb_000679_130 Hb_000679_130 Hb_000025_110--Hb_000679_130 Hb_001599_030 Hb_001599_030 Hb_000025_110--Hb_001599_030 Hb_000212_240 Hb_000212_240 Hb_000025_110--Hb_000212_240 Hb_000913_050 Hb_000913_050 Hb_001444_010--Hb_000913_050 Hb_001444_010--Hb_000679_130 Hb_004994_040 Hb_004994_040 Hb_001444_010--Hb_004994_040 Hb_000797_050 Hb_000797_050 Hb_001444_010--Hb_000797_050 Hb_000700_140 Hb_000700_140 Hb_001493_030--Hb_000700_140 Hb_007317_110 Hb_007317_110 Hb_001493_030--Hb_007317_110 Hb_006827_020 Hb_006827_020 Hb_001493_030--Hb_006827_020 Hb_000152_380 Hb_000152_380 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000538_100--Hb_006827_020 Hb_000538_100--Hb_007317_110 Hb_000538_100--Hb_006252_040 Hb_103012_010 Hb_103012_010 Hb_000538_100--Hb_103012_010 Hb_000538_100--Hb_002304_090 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070 Hb_001926_030 Hb_001926_030 Hb_000879_200--Hb_001926_030 Hb_006620_020 Hb_006620_020 Hb_000879_200--Hb_006620_020 Hb_001595_030 Hb_001595_030 Hb_000879_200--Hb_001595_030 Hb_000853_230 Hb_000853_230 Hb_000879_200--Hb_000853_230 Hb_002518_280 Hb_002518_280 Hb_000879_200--Hb_002518_280 Hb_023386_020 Hb_023386_020 Hb_000879_200--Hb_023386_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.47221 3.45957 4.64347 3.93963 9.23871 10.4396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.1673 4.55182 6.85625 4.74294 3.81703

CAGE analysis