Hb_000618_040

Information

Type -
Description -
Location Contig618: 78028-82606
Sequence    

Annotation

kegg
ID cic:CICLE_v10027942mg
description hypothetical protein
nr
ID XP_006424032.1
description hypothetical protein CICLE_v10027942mg [Citrus clementina]
swissprot
ID Q39238
description Serine/threonine-protein kinase TOUSLED OS=Arabidopsis thaliana GN=TOUSLED PE=1 SV=1
trembl
ID A0A067E2P1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005678mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase tousled isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51314: 51646-82749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000618_040 0.0 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
2 Hb_000451_010 0.0496264785 - - secretory carrier membrane protein, putative [Ricinus communis]
3 Hb_005357_080 0.054950927 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
4 Hb_008511_130 0.0640669904 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
5 Hb_007416_280 0.0646109055 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000019_030 0.0648711155 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
7 Hb_000230_560 0.0670322594 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
8 Hb_032208_090 0.067340029 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
9 Hb_011671_240 0.0682828022 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
10 Hb_003030_070 0.0689534052 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
11 Hb_143629_210 0.0701464534 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
12 Hb_007904_200 0.0721776117 - - protein binding protein, putative [Ricinus communis]
13 Hb_003665_060 0.0741796187 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
14 Hb_000010_330 0.0753989698 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
15 Hb_009557_070 0.0758527964 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000141_250 0.0776422625 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
17 Hb_002774_060 0.0787685137 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
18 Hb_004055_030 0.0792610082 - - casein kinase, putative [Ricinus communis]
19 Hb_003092_040 0.079334933 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
20 Hb_003175_010 0.0797940567 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000618_040 Hb_000618_040 Hb_000451_010 Hb_000451_010 Hb_000618_040--Hb_000451_010 Hb_005357_080 Hb_005357_080 Hb_000618_040--Hb_005357_080 Hb_008511_130 Hb_008511_130 Hb_000618_040--Hb_008511_130 Hb_007416_280 Hb_007416_280 Hb_000618_040--Hb_007416_280 Hb_000019_030 Hb_000019_030 Hb_000618_040--Hb_000019_030 Hb_000230_560 Hb_000230_560 Hb_000618_040--Hb_000230_560 Hb_011671_240 Hb_011671_240 Hb_000451_010--Hb_011671_240 Hb_004907_080 Hb_004907_080 Hb_000451_010--Hb_004907_080 Hb_007904_200 Hb_007904_200 Hb_000451_010--Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090 Hb_005357_080--Hb_000019_030 Hb_002303_070 Hb_002303_070 Hb_005357_080--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_005357_080--Hb_000215_110 Hb_003665_060 Hb_003665_060 Hb_005357_080--Hb_003665_060 Hb_003226_140 Hb_003226_140 Hb_005357_080--Hb_003226_140 Hb_000141_250 Hb_000141_250 Hb_008511_130--Hb_000141_250 Hb_002997_080 Hb_002997_080 Hb_008511_130--Hb_002997_080 Hb_008511_130--Hb_000230_560 Hb_000390_170 Hb_000390_170 Hb_008511_130--Hb_000390_170 Hb_000094_300 Hb_000094_300 Hb_008511_130--Hb_000094_300 Hb_003092_040 Hb_003092_040 Hb_007416_280--Hb_003092_040 Hb_004032_150 Hb_004032_150 Hb_007416_280--Hb_004032_150 Hb_002026_180 Hb_002026_180 Hb_007416_280--Hb_002026_180 Hb_001489_150 Hb_001489_150 Hb_007416_280--Hb_001489_150 Hb_019280_040 Hb_019280_040 Hb_007416_280--Hb_019280_040 Hb_001575_090 Hb_001575_090 Hb_000019_030--Hb_001575_090 Hb_000120_670 Hb_000120_670 Hb_000019_030--Hb_000120_670 Hb_000019_030--Hb_011671_240 Hb_000468_060 Hb_000468_060 Hb_000019_030--Hb_000468_060 Hb_000230_560--Hb_002997_080 Hb_000230_560--Hb_003665_060 Hb_000230_560--Hb_000141_250 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000883_020 Hb_000883_020 Hb_000230_560--Hb_000883_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.75327 5.10413 7.71188 8.10261 8.86027 12.444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.648 8.25148 10.0894 5.36154 4.0644

CAGE analysis